Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26262 | 3' | -61.6 | NC_005345.2 | + | 44048 | 1.1 | 0.000184 |
Target: 5'- gGGCAUCGGGAUGCCGCGCUCGCGGCGg -3' miRNA: 3'- -CCGUAGCCCUACGGCGCGAGCGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 48562 | 0.83 | 0.024086 |
Target: 5'- gGGCGUCGcGGAUgcgggcGCCGaugaGCUCGCGGCGg -3' miRNA: 3'- -CCGUAGC-CCUA------CGGCg---CGAGCGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 44545 | 0.8 | 0.037888 |
Target: 5'- gGGCAaCGGGAacaggaccgcGCUGCGUUCGCGGCGa -3' miRNA: 3'- -CCGUaGCCCUa---------CGGCGCGAGCGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 37795 | 0.78 | 0.059188 |
Target: 5'- gGGCugcugccGUUGGcGGUGCCGCucacuGCUCGCGGCGc -3' miRNA: 3'- -CCG-------UAGCC-CUACGGCG-----CGAGCGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 8761 | 0.77 | 0.062754 |
Target: 5'- aGCAUCGGGGagGCUGCGCaggaugagCGCGGUGa -3' miRNA: 3'- cCGUAGCCCUa-CGGCGCGa-------GCGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 35486 | 0.76 | 0.080525 |
Target: 5'- cGGCGUCgaGGGcgGCgCGCuGCUCGuCGGCGc -3' miRNA: 3'- -CCGUAG--CCCuaCG-GCG-CGAGC-GCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 5604 | 0.76 | 0.078334 |
Target: 5'- uGCcgUGGGgcGCCGgGCUCGUGGCc -3' miRNA: 3'- cCGuaGCCCuaCGGCgCGAGCGCCGc -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 39336 | 0.75 | 0.094946 |
Target: 5'- gGGCAUCGGcGGcaccgGCCGCGacacaGCGGCGa -3' miRNA: 3'- -CCGUAGCC-CUa----CGGCGCgag--CGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 31817 | 0.75 | 0.094946 |
Target: 5'- cGGgGUcCGGGAUGCgUGCGUgcaccCGCGGCGg -3' miRNA: 3'- -CCgUA-GCCCUACG-GCGCGa----GCGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 13399 | 0.75 | 0.089886 |
Target: 5'- uGCccCGGGAUGCCGcCGCUCGUucggccgccgcgGGCGa -3' miRNA: 3'- cCGuaGCCCUACGGC-GCGAGCG------------CCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 27142 | 0.74 | 0.103044 |
Target: 5'- cGGCGUCGaGcUGCCcgagGCGCUgCGCGGCGu -3' miRNA: 3'- -CCGUAGCcCuACGG----CGCGA-GCGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 42939 | 0.74 | 0.114856 |
Target: 5'- aGGUAUCGGGAggugGCCaggGCGC-CGCGGa- -3' miRNA: 3'- -CCGUAGCCCUa---CGG---CGCGaGCGCCgc -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 34687 | 0.74 | 0.105885 |
Target: 5'- gGGCGUCGGGgAUGCCGaGCgaguCGGCGa -3' miRNA: 3'- -CCGUAGCCC-UACGGCgCGagc-GCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 27207 | 0.73 | 0.121225 |
Target: 5'- cGGCAgCGGGucgGCgcaGCGCUCGCaGGUGg -3' miRNA: 3'- -CCGUaGCCCua-CGg--CGCGAGCG-CCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 31460 | 0.73 | 0.124532 |
Target: 5'- aGGCGcCGGGGUGCgggugugaggCGgGCgagCGCGGCGu -3' miRNA: 3'- -CCGUaGCCCUACG----------GCgCGa--GCGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 17489 | 0.73 | 0.13861 |
Target: 5'- cGGCGUCGGGAaggaacugcggGCCGcCGgUCGcCGGCc -3' miRNA: 3'- -CCGUAGCCCUa----------CGGC-GCgAGC-GCCGc -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 35435 | 0.73 | 0.134599 |
Target: 5'- cGGCGUCGGGGUcccaugugaacucGCCGCaUUCGagGGCGa -3' miRNA: 3'- -CCGUAGCCCUA-------------CGGCGcGAGCg-CCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 10679 | 0.73 | 0.140096 |
Target: 5'- cGGCG-CGGGAagUGcCCGCGCUgugcccggccuguccUGCGGCa -3' miRNA: 3'- -CCGUaGCCCU--AC-GGCGCGA---------------GCGCCGc -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 39418 | 0.73 | 0.13861 |
Target: 5'- aGCGUCGGcGcgGUCGCgGCccgCGCGGCGc -3' miRNA: 3'- cCGUAGCC-CuaCGGCG-CGa--GCGCCGC- -5' |
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26262 | 3' | -61.6 | NC_005345.2 | + | 37656 | 0.73 | 0.134959 |
Target: 5'- cGGCGUCGGuGcggGCCGC-CUgCGCGGCc -3' miRNA: 3'- -CCGUAGCC-Cua-CGGCGcGA-GCGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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