miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 3' -57.9 NC_005345.2 + 41712 1.1 0.000575
Target:  5'- uCCGGUCCUGCUCGACGUCAACGCCCGu -3'
miRNA:   3'- -GGCCAGGACGAGCUGCAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 33045 0.76 0.142633
Target:  5'- gCGGUCCgGCUCGACGUUGG-GCUCGu -3'
miRNA:   3'- gGCCAGGaCGAGCUGCAGUUgCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 18509 0.76 0.15459
Target:  5'- -aGGUCgaGCgaguacgCGGCGUCGGCGUCCGg -3'
miRNA:   3'- ggCCAGgaCGa------GCUGCAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 32326 0.75 0.167003
Target:  5'- gCCGGUCCUGCUCGAacCGgaucaccUCAGCGUaCGa -3'
miRNA:   3'- -GGCCAGGACGAGCU--GC-------AGUUGCGgGC- -5'
26266 3' -57.9 NC_005345.2 + 4665 0.75 0.167447
Target:  5'- cUCGGccgucgccuUCgCUGCUCGGC-UCGACGCCCGu -3'
miRNA:   3'- -GGCC---------AG-GACGAGCUGcAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 47120 0.75 0.167447
Target:  5'- gCCGGgCCcGCUCGACGagGACGCCg- -3'
miRNA:   3'- -GGCCaGGaCGAGCUGCagUUGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 25544 0.74 0.191011
Target:  5'- cCCGGUCC-GC-CGGCGUCGcgccgaACGCCgCGa -3'
miRNA:   3'- -GGCCAGGaCGaGCUGCAGU------UGCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 18250 0.74 0.191011
Target:  5'- cCCGGUgCUGCUCGccggccGCGcCGuCGCCCGc -3'
miRNA:   3'- -GGCCAgGACGAGC------UGCaGUuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 34345 0.74 0.196061
Target:  5'- cCCGcGcCCgccGCUCGACGUCGaaGCGCaCCGg -3'
miRNA:   3'- -GGC-CaGGa--CGAGCUGCAGU--UGCG-GGC- -5'
26266 3' -57.9 NC_005345.2 + 31592 0.73 0.223084
Target:  5'- gCCGGgcCCUGCUCGGCG-CG--GCCCGc -3'
miRNA:   3'- -GGCCa-GGACGAGCUGCaGUugCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 4480 0.73 0.234753
Target:  5'- gCCGuGUCCgGCUCGACGagCcgUGCCCa -3'
miRNA:   3'- -GGC-CAGGaCGAGCUGCa-GuuGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 18896 0.73 0.246929
Target:  5'- cCCGG-CCUGCUCGGCGgccgCGaucAUGUCCu -3'
miRNA:   3'- -GGCCaGGACGAGCUGCa---GU---UGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 45194 0.73 0.246929
Target:  5'- cCCGGgggUC-GcCUCGACGUacaGACGCCCGg -3'
miRNA:   3'- -GGCCa--GGaC-GAGCUGCAg--UUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 34474 0.72 0.279658
Target:  5'- gCCGGcCCgGCaUCGGCGaCGcCGCCCGg -3'
miRNA:   3'- -GGCCaGGaCG-AGCUGCaGUuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 34943 0.71 0.308255
Target:  5'- -aGGgCCUGCUCGGCGgacaccucggCGGCGUCCu -3'
miRNA:   3'- ggCCaGGACGAGCUGCa---------GUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 41077 0.71 0.308255
Target:  5'- cCCGGccgCCUGCUCGGCGgCGA-GCuuGa -3'
miRNA:   3'- -GGCCa--GGACGAGCUGCaGUUgCGggC- -5'
26266 3' -57.9 NC_005345.2 + 16944 0.71 0.315744
Target:  5'- gCCGG-CC-GCUCGACGa-GACGCCuCGg -3'
miRNA:   3'- -GGCCaGGaCGAGCUGCagUUGCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 29942 0.71 0.315744
Target:  5'- -aGGaCCgGCUCGACGUCGGgGCCg- -3'
miRNA:   3'- ggCCaGGaCGAGCUGCAGUUgCGGgc -5'
26266 3' -57.9 NC_005345.2 + 11829 0.71 0.32337
Target:  5'- aCCGGaCCgUGggCGAgGUCGACGCCaCGg -3'
miRNA:   3'- -GGCCaGG-ACgaGCUgCAGUUGCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 40705 0.71 0.328789
Target:  5'- gCCGGUgccguccguccacaCCgaccGCUCGGCGUCcagccGCGCCCc -3'
miRNA:   3'- -GGCCA--------------GGa---CGAGCUGCAGu----UGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.