miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 3' -57.9 NC_005345.2 + 18250 0.74 0.191011
Target:  5'- cCCGGUgCUGCUCGccggccGCGcCGuCGCCCGc -3'
miRNA:   3'- -GGCCAgGACGAGC------UGCaGUuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 20523 0.69 0.434655
Target:  5'- cCCGGgaucggCCUGCggCGAC----ACGCCCGg -3'
miRNA:   3'- -GGCCa-----GGACGa-GCUGcaguUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 19263 0.68 0.453657
Target:  5'- aCCGGgugcaCCUG-UCGAcCGUCcuCGCCCa -3'
miRNA:   3'- -GGCCa----GGACgAGCU-GCAGuuGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 339 0.66 0.607606
Target:  5'- aCGGU-CUGCgUGuccuucuCGUCAAUGCCCa -3'
miRNA:   3'- gGCCAgGACGaGCu------GCAGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 40102 0.71 0.331132
Target:  5'- gCCGcG-CCUGCUCGGUGUCAcACGCCg- -3'
miRNA:   3'- -GGC-CaGGACGAGCUGCAGU-UGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 27218 0.7 0.347066
Target:  5'- aCGGcUCUUGCg-GAugggaaggauuuCGUCGACGCCCGg -3'
miRNA:   3'- gGCC-AGGACGagCU------------GCAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 47613 0.7 0.355235
Target:  5'- cCCGGUUg-GCUCGAC----GCGCCCGa -3'
miRNA:   3'- -GGCCAGgaCGAGCUGcaguUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 43106 0.7 0.371978
Target:  5'- uCCGGUCCUGg--GGCGUCccggaccgGugGCCCa -3'
miRNA:   3'- -GGCCAGGACgagCUGCAG--------UugCGGGc -5'
26266 3' -57.9 NC_005345.2 + 42065 0.69 0.389249
Target:  5'- aCCGG--CUGCUCGGCGaCAGCGUCg- -3'
miRNA:   3'- -GGCCagGACGAGCUGCaGUUGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 24505 0.69 0.425328
Target:  5'- gCGGgaUCCUGgUCGACcaccgcgaGGCGCCCGg -3'
miRNA:   3'- gGCC--AGGACgAGCUGcag-----UUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 40707 0.69 0.39808
Target:  5'- aCCGcGcCCgUGCUCGuCGUCGacaGCGaCCCGg -3'
miRNA:   3'- -GGC-CaGG-ACGAGCuGCAGU---UGC-GGGC- -5'
26266 3' -57.9 NC_005345.2 + 14129 0.7 0.371978
Target:  5'- aCCGGUCCcGCccccaCGugGccgccgCAGCGCCCc -3'
miRNA:   3'- -GGCCAGGaCGa----GCugCa-----GUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 31592 0.73 0.223084
Target:  5'- gCCGGgcCCUGCUCGGCG-CG--GCCCGc -3'
miRNA:   3'- -GGCCa-GGACGAGCUGCaGUugCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 14815 0.69 0.416122
Target:  5'- gCGG-CggGCgcgggUGugGUCGACGCCCGa -3'
miRNA:   3'- gGCCaGgaCGa----GCugCAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 16944 0.71 0.315744
Target:  5'- gCCGG-CC-GCUCGACGa-GACGCCuCGg -3'
miRNA:   3'- -GGCCaGGaCGAGCUGCagUUGCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 3852 0.7 0.371978
Target:  5'- gCGGaCCcgGCugaUCGGCGUCGGCGUCCc -3'
miRNA:   3'- gGCCaGGa-CG---AGCUGCAGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 41349 0.69 0.416122
Target:  5'- aCGGcgUCCgGCggCGGCG-CAGCGCUCGg -3'
miRNA:   3'- gGCC--AGGaCGa-GCUGCaGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 13159 0.68 0.444099
Target:  5'- gCCGaGUCC-GCUCGGCGgaaggaCAACcgaugaccgGCCCGa -3'
miRNA:   3'- -GGC-CAGGaCGAGCUGCa-----GUUG---------CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 11829 0.71 0.32337
Target:  5'- aCCGGaCCgUGggCGAgGUCGACGCCaCGg -3'
miRNA:   3'- -GGCCaGG-ACgaGCUgCAGUUGCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 16133 0.7 0.355235
Target:  5'- gCGGcCgaGCcCGAuCGUCGACGCCCc -3'
miRNA:   3'- gGCCaGgaCGaGCU-GCAGUUGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.