Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26266 | 3' | -57.9 | NC_005345.2 | + | 32196 | 0.68 | 0.473102 |
Target: 5'- cCUGGUCgUGUUCGGgcuCGUCAACccggGCUCGu -3' miRNA: 3'- -GGCCAGgACGAGCU---GCAGUUG----CGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 19263 | 0.68 | 0.453657 |
Target: 5'- aCCGGgugcaCCUG-UCGAcCGUCcuCGCCCa -3' miRNA: 3'- -GGCCa----GGACgAGCU-GCAGuuGCGGGc -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 14129 | 0.7 | 0.371978 |
Target: 5'- aCCGGUCCcGCccccaCGugGccgccgCAGCGCCCc -3' miRNA: 3'- -GGCCAGGaCGa----GCugCa-----GUUGCGGGc -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 11829 | 0.71 | 0.32337 |
Target: 5'- aCCGGaCCgUGggCGAgGUCGACGCCaCGg -3' miRNA: 3'- -GGCCaGG-ACgaGCUgCAGUUGCGG-GC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 13404 | 0.67 | 0.533749 |
Target: 5'- gCCGGuucgUCCUGCgccgcaccgUCGACGUCuccggagUGUCCGg -3' miRNA: 3'- -GGCC----AGGACG---------AGCUGCAGuu-----GCGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 4430 | 0.67 | 0.513187 |
Target: 5'- gCgGGagUUGCUCGACcugGUCAcuggcACGCCCa -3' miRNA: 3'- -GgCCagGACGAGCUG---CAGU-----UGCGGGc -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 20523 | 0.69 | 0.434655 |
Target: 5'- cCCGGgaucggCCUGCggCGAC----ACGCCCGg -3' miRNA: 3'- -GGCCa-----GGACGa-GCUGcaguUGCGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 16944 | 0.71 | 0.315744 |
Target: 5'- gCCGG-CC-GCUCGACGa-GACGCCuCGg -3' miRNA: 3'- -GGCCaGGaCGAGCUGCagUUGCGG-GC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 23510 | 0.67 | 0.503028 |
Target: 5'- aCUGGcaguUCCUGCUCGACac---CGCCCu -3' miRNA: 3'- -GGCC----AGGACGAGCUGcaguuGCGGGc -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 31592 | 0.73 | 0.223084 |
Target: 5'- gCCGGgcCCUGCUCGGCG-CG--GCCCGc -3' miRNA: 3'- -GGCCa-GGACGAGCUGCaGUugCGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 13159 | 0.68 | 0.444099 |
Target: 5'- gCCGaGUCC-GCUCGGCGgaaggaCAACcgaugaccgGCCCGa -3' miRNA: 3'- -GGC-CAGGaCGAGCUGCa-----GUUG---------CGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 4523 | 0.68 | 0.48298 |
Target: 5'- uCCGGUCUgcCUCGACGagGggcACGaCCCGg -3' miRNA: 3'- -GGCCAGGacGAGCUGCagU---UGC-GGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 14815 | 0.69 | 0.416122 |
Target: 5'- gCGG-CggGCgcgggUGugGUCGACGCCCGa -3' miRNA: 3'- gGCCaGgaCGa----GCugCAGUUGCGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 42065 | 0.69 | 0.389249 |
Target: 5'- aCCGG--CUGCUCGGCGaCAGCGUCg- -3' miRNA: 3'- -GGCCagGACGAGCUGCaGUUGCGGgc -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 47613 | 0.7 | 0.355235 |
Target: 5'- cCCGGUUg-GCUCGAC----GCGCCCGa -3' miRNA: 3'- -GGCCAGgaCGAGCUGcaguUGCGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 40102 | 0.71 | 0.331132 |
Target: 5'- gCCGcG-CCUGCUCGGUGUCAcACGCCg- -3' miRNA: 3'- -GGC-CaGGACGAGCUGCAGU-UGCGGgc -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 25710 | 0.66 | 0.575676 |
Target: 5'- aCCGGUCC-GgaCGGCGaaccCGACaCCCGg -3' miRNA: 3'- -GGCCAGGaCgaGCUGCa---GUUGcGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 24820 | 0.67 | 0.54414 |
Target: 5'- aCCGGaUCgUGCUCGGguUCGACgGCUCGc -3' miRNA: 3'- -GGCC-AGgACGAGCUgcAGUUG-CGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 16878 | 0.67 | 0.523429 |
Target: 5'- aCGGcCgaGCguggCGGCGgaaGGCGCCCGu -3' miRNA: 3'- gGCCaGgaCGa---GCUGCag-UUGCGGGC- -5' |
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26266 | 3' | -57.9 | NC_005345.2 | + | 33402 | 0.67 | 0.513187 |
Target: 5'- gCGGUCgaGgUCGGCGUCGGguacguaucgguCGuCCCGa -3' miRNA: 3'- gGCCAGgaCgAGCUGCAGUU------------GC-GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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