miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 3' -57.9 NC_005345.2 + 13159 0.68 0.444099
Target:  5'- gCCGaGUCC-GCUCGGCGgaaggaCAACcgaugaccgGCCCGa -3'
miRNA:   3'- -GGC-CAGGaCGAGCUGCa-----GUUG---------CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 13266 0.67 0.533749
Target:  5'- aCCGG-CgaGCagcucgUCGGCGaCGACGCCCc -3'
miRNA:   3'- -GGCCaGgaCG------AGCUGCaGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 13404 0.67 0.533749
Target:  5'- gCCGGuucgUCCUGCgccgcaccgUCGACGUCuccggagUGUCCGg -3'
miRNA:   3'- -GGCC----AGGACG---------AGCUGCAGuu-----GCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 14129 0.7 0.371978
Target:  5'- aCCGGUCCcGCccccaCGugGccgccgCAGCGCCCc -3'
miRNA:   3'- -GGCCAGGaCGa----GCugCa-----GUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 14605 0.67 0.523429
Target:  5'- gCGGcUCCggaUCGACGgguACGCCCGc -3'
miRNA:   3'- gGCC-AGGacgAGCUGCaguUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 14755 0.66 0.583098
Target:  5'- gUCGGUgaCgUGCUCGACcgggcucgucgacugCAACGCCCc -3'
miRNA:   3'- -GGCCA--GgACGAGCUGca-------------GUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 14815 0.69 0.416122
Target:  5'- gCGG-CggGCgcgggUGugGUCGACGCCCGa -3'
miRNA:   3'- gGCCaGgaCGa----GCugCAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 14989 0.67 0.523429
Target:  5'- cUCGG-CCgagGaCUCGGaucCGUCGACuGCCCGg -3'
miRNA:   3'- -GGCCaGGa--C-GAGCU---GCAGUUG-CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 16133 0.7 0.355235
Target:  5'- gCGGcCgaGCcCGAuCGUCGACGCCCc -3'
miRNA:   3'- gGCCaGgaCGaGCU-GCAGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 16645 0.66 0.586285
Target:  5'- uCCGGUgCUGUUCGucaucACGgUCGAgGCCgCGc -3'
miRNA:   3'- -GGCCAgGACGAGC-----UGC-AGUUgCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 16878 0.67 0.523429
Target:  5'- aCGGcCgaGCguggCGGCGgaaGGCGCCCGu -3'
miRNA:   3'- gGCCaGgaCGa---GCUGCag-UUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 16944 0.71 0.315744
Target:  5'- gCCGG-CC-GCUCGACGa-GACGCCuCGg -3'
miRNA:   3'- -GGCCaGGaCGAGCUGCagUUGCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 17160 0.69 0.410656
Target:  5'- gCGGUCgUGC-CGACGggggcggcguagaagUCGGCGCCUu -3'
miRNA:   3'- gGCCAGgACGaGCUGC---------------AGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 17472 0.67 0.537897
Target:  5'- aCGGgcugcgCCUGuCUCGGCGUCGGgaaggaacugcgggcCGCCgGu -3'
miRNA:   3'- gGCCa-----GGAC-GAGCUGCAGUU---------------GCGGgC- -5'
26266 3' -57.9 NC_005345.2 + 17939 0.66 0.586285
Target:  5'- gUCGGUCCggaacUGUcCGGCGUC--CGCUCGg -3'
miRNA:   3'- -GGCCAGG-----ACGaGCUGCAGuuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 18250 0.74 0.191011
Target:  5'- cCCGGUgCUGCUCGccggccGCGcCGuCGCCCGc -3'
miRNA:   3'- -GGCCAgGACGAGC------UGCaGUuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 18509 0.76 0.15459
Target:  5'- -aGGUCgaGCgaguacgCGGCGUCGGCGUCCGg -3'
miRNA:   3'- ggCCAGgaCGa------GCUGCAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 18541 0.68 0.463326
Target:  5'- aCCGGUgggCUGCUCGggGCGcUCGccgggugcGCGCCCa -3'
miRNA:   3'- -GGCCAg--GACGAGC--UGC-AGU--------UGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 18896 0.73 0.246929
Target:  5'- cCCGG-CCUGCUCGGCGgccgCGaucAUGUCCu -3'
miRNA:   3'- -GGCCaGGACGAGCUGCa---GU---UGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 18999 0.7 0.355235
Target:  5'- cUCGGcCCgaGCggggcggcgccUCGACGUCGcCGCCCGa -3'
miRNA:   3'- -GGCCaGGa-CG-----------AGCUGCAGUuGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.