miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 3' -57.9 NC_005345.2 + 564 0.66 0.583098
Target:  5'- -gGGUCCUcGCccgccgcgagcucaUCGGCGcccgcauccgCGACGCCCGc -3'
miRNA:   3'- ggCCAGGA-CG--------------AGCUGCa---------GUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 24348 0.66 0.59054
Target:  5'- uCCGGUCgCccggcugcaccaccuUGC-CGAgGUCGgacgACGCCCGc -3'
miRNA:   3'- -GGCCAG-G---------------ACGaGCUgCAGU----UGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 17939 0.66 0.586285
Target:  5'- gUCGGUCCggaacUGUcCGGCGUC--CGCUCGg -3'
miRNA:   3'- -GGCCAGG-----ACGaGCUGCAGuuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 23510 0.67 0.503028
Target:  5'- aCUGGcaguUCCUGCUCGACac---CGCCCu -3'
miRNA:   3'- -GGCC----AGGACGAGCUGcaguuGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 16878 0.67 0.523429
Target:  5'- aCGGcCgaGCguggCGGCGgaaGGCGCCCGu -3'
miRNA:   3'- gGCCaGgaCGa---GCUGCag-UUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 24820 0.67 0.54414
Target:  5'- aCCGGaUCgUGCUCGGguUCGACgGCUCGc -3'
miRNA:   3'- -GGCC-AGgACGAGCUgcAGUUG-CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 13266 0.67 0.533749
Target:  5'- aCCGG-CgaGCagcucgUCGGCGaCGACGCCCc -3'
miRNA:   3'- -GGCCaGgaCG------AGCUGCaGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 33402 0.67 0.513187
Target:  5'- gCGGUCgaGgUCGGCGUCGGguacguaucgguCGuCCCGa -3'
miRNA:   3'- gGCCAGgaCgAGCUGCAGUU------------GC-GGGC- -5'
26266 3' -57.9 NC_005345.2 + 4430 0.67 0.513187
Target:  5'- gCgGGagUUGCUCGACcugGUCAcuggcACGCCCa -3'
miRNA:   3'- -GgCCagGACGAGCUG---CAGU-----UGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 29865 0.67 0.527548
Target:  5'- cCCGGUCCgGCUguggacgcacgcggcCGcCGUCGGCauCCCGg -3'
miRNA:   3'- -GGCCAGGaCGA---------------GCuGCAGUUGc-GGGC- -5'
26266 3' -57.9 NC_005345.2 + 37968 0.67 0.554596
Target:  5'- aUCGGgaUCCggugGCUCGACG-CGGCGagugCCGa -3'
miRNA:   3'- -GGCC--AGGa---CGAGCUGCaGUUGCg---GGC- -5'
26266 3' -57.9 NC_005345.2 + 14605 0.67 0.523429
Target:  5'- gCGGcUCCggaUCGACGgguACGCCCGc -3'
miRNA:   3'- gGCC-AGGacgAGCUGCaguUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 11866 0.67 0.523429
Target:  5'- aUCGGcCCUGCacgacgugccccUCGACGaCGACGCgaCCGc -3'
miRNA:   3'- -GGCCaGGACG------------AGCUGCaGUUGCG--GGC- -5'
26266 3' -57.9 NC_005345.2 + 13404 0.67 0.533749
Target:  5'- gCCGGuucgUCCUGCgccgcaccgUCGACGUCuccggagUGUCCGg -3'
miRNA:   3'- -GGCC----AGGACG---------AGCUGCAGuu-----GCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 17472 0.67 0.537897
Target:  5'- aCGGgcugcgCCUGuCUCGGCGUCGGgaaggaacugcgggcCGCCgGu -3'
miRNA:   3'- gGCCa-----GGAC-GAGCUGCAGUU---------------GCGGgC- -5'
26266 3' -57.9 NC_005345.2 + 26875 0.67 0.503028
Target:  5'- cCCGG-CC-GcCUCGACGaUCcgcuGCGCCCa -3'
miRNA:   3'- -GGCCaGGaC-GAGCUGC-AGu---UGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 4608 0.67 0.523429
Target:  5'- gCGGUCCUGUUCc-CGU---UGCCCGg -3'
miRNA:   3'- gGCCAGGACGAGcuGCAguuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 20830 0.67 0.523429
Target:  5'- gUCGucGUCCUGgUCGuCGUCGccguCGCCCu -3'
miRNA:   3'- -GGC--CAGGACgAGCuGCAGUu---GCGGGc -5'
26266 3' -57.9 NC_005345.2 + 5870 0.67 0.523429
Target:  5'- gCCGcG-CCUGCUCGGgaGUCAugGCgUCGu -3'
miRNA:   3'- -GGC-CaGGACGAGCUg-CAGUugCG-GGC- -5'
26266 3' -57.9 NC_005345.2 + 14989 0.67 0.523429
Target:  5'- cUCGG-CCgagGaCUCGGaucCGUCGACuGCCCGg -3'
miRNA:   3'- -GGCCaGGa--C-GAGCU---GCAGUUG-CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.