miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 3' -57.9 NC_005345.2 + 40102 0.71 0.331132
Target:  5'- gCCGcG-CCUGCUCGGUGUCAcACGCCg- -3'
miRNA:   3'- -GGC-CaGGACGAGCUGCAGU-UGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 27218 0.7 0.347066
Target:  5'- aCGGcUCUUGCg-GAugggaaggauuuCGUCGACGCCCGg -3'
miRNA:   3'- gGCC-AGGACGagCU------------GCAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 12996 0.7 0.347066
Target:  5'- gCCGGaCCcGC-CGAUGUCGGCgGCCCc -3'
miRNA:   3'- -GGCCaGGaCGaGCUGCAGUUG-CGGGc -5'
26266 3' -57.9 NC_005345.2 + 18999 0.7 0.355235
Target:  5'- cUCGGcCCgaGCggggcggcgccUCGACGUCGcCGCCCGa -3'
miRNA:   3'- -GGCCaGGa-CG-----------AGCUGCAGUuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 16133 0.7 0.355235
Target:  5'- gCGGcCgaGCcCGAuCGUCGACGCCCc -3'
miRNA:   3'- gGCCaGgaCGaGCU-GCAGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 47613 0.7 0.355235
Target:  5'- cCCGGUUg-GCUCGAC----GCGCCCGa -3'
miRNA:   3'- -GGCCAGgaCGAGCUGcaguUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 35902 0.7 0.36354
Target:  5'- gCCGGUCgUGC-CGACGgUCGucauccagugACGCCgGg -3'
miRNA:   3'- -GGCCAGgACGaGCUGC-AGU----------UGCGGgC- -5'
26266 3' -57.9 NC_005345.2 + 14129 0.7 0.371978
Target:  5'- aCCGGUCCcGCccccaCGugGccgccgCAGCGCCCc -3'
miRNA:   3'- -GGCCAGGaCGa----GCugCa-----GUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 43106 0.7 0.371978
Target:  5'- uCCGGUCCUGg--GGCGUCccggaccgGugGCCCa -3'
miRNA:   3'- -GGCCAGGACgagCUGCAG--------UugCGGGc -5'
26266 3' -57.9 NC_005345.2 + 3852 0.7 0.371978
Target:  5'- gCGGaCCcgGCugaUCGGCGUCGGCGUCCc -3'
miRNA:   3'- gGCCaGGa-CG---AGCUGCAGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 10731 0.69 0.389249
Target:  5'- gCCGGauggCCgcGCUCGAUGUCGuCGCCg- -3'
miRNA:   3'- -GGCCa---GGa-CGAGCUGCAGUuGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 42065 0.69 0.389249
Target:  5'- aCCGG--CUGCUCGGCGaCAGCGUCg- -3'
miRNA:   3'- -GGCCagGACGAGCUGCaGUUGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 40707 0.69 0.39808
Target:  5'- aCCGcGcCCgUGCUCGuCGUCGacaGCGaCCCGg -3'
miRNA:   3'- -GGC-CaGG-ACGAGCuGCAGU---UGC-GGGC- -5'
26266 3' -57.9 NC_005345.2 + 39244 0.69 0.407038
Target:  5'- cCCGGucauUCCUGCUCGcCGcCGAguucgGCCCGc -3'
miRNA:   3'- -GGCC----AGGACGAGCuGCaGUUg----CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 22157 0.69 0.407038
Target:  5'- uCCGcGUCCcgcagGCUCGAcagccCGUCgAACGCCgCGa -3'
miRNA:   3'- -GGC-CAGGa----CGAGCU-----GCAG-UUGCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 17160 0.69 0.410656
Target:  5'- gCGGUCgUGC-CGACGggggcggcguagaagUCGGCGCCUu -3'
miRNA:   3'- gGCCAGgACGaGCUGC---------------AGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 36905 0.69 0.416122
Target:  5'- gCCGGgCCUGCUCGcucgacucGCGgUCAGaGUCCGg -3'
miRNA:   3'- -GGCCaGGACGAGC--------UGC-AGUUgCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 29474 0.69 0.416122
Target:  5'- cCCGGUCCaaCUCGucgagcuCGUCGGCGCUg- -3'
miRNA:   3'- -GGCCAGGacGAGCu------GCAGUUGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 41349 0.69 0.416122
Target:  5'- aCGGcgUCCgGCggCGGCG-CAGCGCUCGg -3'
miRNA:   3'- gGCC--AGGaCGa-GCUGCaGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 14815 0.69 0.416122
Target:  5'- gCGG-CggGCgcgggUGugGUCGACGCCCGa -3'
miRNA:   3'- gGCCaGgaCGa----GCugCAGUUGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.