miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 3' -57.9 NC_005345.2 + 339 0.66 0.607606
Target:  5'- aCGGU-CUGCgUGuccuucuCGUCAAUGCCCa -3'
miRNA:   3'- gGCCAgGACGaGCu------GCAGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 564 0.66 0.583098
Target:  5'- -gGGUCCUcGCccgccgcgagcucaUCGGCGcccgcauccgCGACGCCCGc -3'
miRNA:   3'- ggCCAGGA-CG--------------AGCUGCa---------GUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 3716 0.68 0.492957
Target:  5'- gCCGGggggugCCUGC--GACGUCGACGaCgCGg -3'
miRNA:   3'- -GGCCa-----GGACGagCUGCAGUUGC-GgGC- -5'
26266 3' -57.9 NC_005345.2 + 3852 0.7 0.371978
Target:  5'- gCGGaCCcgGCugaUCGGCGUCGGCGUCCc -3'
miRNA:   3'- gGCCaGGa-CG---AGCUGCAGUUGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 4430 0.67 0.513187
Target:  5'- gCgGGagUUGCUCGACcugGUCAcuggcACGCCCa -3'
miRNA:   3'- -GgCCagGACGAGCUG---CAGU-----UGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 4480 0.73 0.234753
Target:  5'- gCCGuGUCCgGCUCGACGagCcgUGCCCa -3'
miRNA:   3'- -GGC-CAGGaCGAGCUGCa-GuuGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 4523 0.68 0.48298
Target:  5'- uCCGGUCUgcCUCGACGagGggcACGaCCCGg -3'
miRNA:   3'- -GGCCAGGacGAGCUGCagU---UGC-GGGC- -5'
26266 3' -57.9 NC_005345.2 + 4608 0.67 0.523429
Target:  5'- gCGGUCCUGUUCc-CGU---UGCCCGg -3'
miRNA:   3'- gGCCAGGACGAGcuGCAguuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 4665 0.75 0.167447
Target:  5'- cUCGGccgucgccuUCgCUGCUCGGC-UCGACGCCCGu -3'
miRNA:   3'- -GGCC---------AG-GACGAGCUGcAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 5870 0.67 0.523429
Target:  5'- gCCGcG-CCUGCUCGGgaGUCAugGCgUCGu -3'
miRNA:   3'- -GGC-CaGGACGAGCUg-CAGUugCG-GGC- -5'
26266 3' -57.9 NC_005345.2 + 6182 0.66 0.596932
Target:  5'- cCCGGcCCgGUUCGuGCG-CGugcCGCCCGg -3'
miRNA:   3'- -GGCCaGGaCGAGC-UGCaGUu--GCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 9097 0.68 0.492957
Target:  5'- aCGGUCCccGCUgUGugGUCGAgcUGCUCGa -3'
miRNA:   3'- gGCCAGGa-CGA-GCugCAGUU--GCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 9176 0.68 0.48298
Target:  5'- gCCGGUCgUGUgCGAgcUGaUCGACGCCgGg -3'
miRNA:   3'- -GGCCAGgACGaGCU--GC-AGUUGCGGgC- -5'
26266 3' -57.9 NC_005345.2 + 10731 0.69 0.389249
Target:  5'- gCCGGauggCCgcGCUCGAUGUCGuCGCCg- -3'
miRNA:   3'- -GGCCa---GGa-CGAGCUGCAGUuGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 11192 0.66 0.596932
Target:  5'- aCCGGaUCCcgauccGCUCGggcaccgucgGCGUCGagGCGUCCGc -3'
miRNA:   3'- -GGCC-AGGa-----CGAGC----------UGCAGU--UGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 11829 0.71 0.32337
Target:  5'- aCCGGaCCgUGggCGAgGUCGACGCCaCGg -3'
miRNA:   3'- -GGCCaGG-ACgaGCUgCAGUUGCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 11866 0.67 0.523429
Target:  5'- aUCGGcCCUGCacgacgugccccUCGACGaCGACGCgaCCGc -3'
miRNA:   3'- -GGCCaGGACG------------AGCUGCaGUUGCG--GGC- -5'
26266 3' -57.9 NC_005345.2 + 12255 0.66 0.56511
Target:  5'- cCCGGUCCcGCUU--CGUCGcgaGCCCc -3'
miRNA:   3'- -GGCCAGGaCGAGcuGCAGUug-CGGGc -5'
26266 3' -57.9 NC_005345.2 + 12289 0.66 0.575676
Target:  5'- cCUGGUCC-GCUCGGgaUCGAgUGCCCc -3'
miRNA:   3'- -GGCCAGGaCGAGCUgcAGUU-GCGGGc -5'
26266 3' -57.9 NC_005345.2 + 12996 0.7 0.347066
Target:  5'- gCCGGaCCcGC-CGAUGUCGGCgGCCCc -3'
miRNA:   3'- -GGCCaGGaCGaGCUGCAGUUG-CGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.