miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 3' -57.9 NC_005345.2 + 48468 0.66 0.607606
Target:  5'- uCCGGaagCCUGCgcCGAagagCAACGCCgGg -3'
miRNA:   3'- -GGCCa--GGACGa-GCUgca-GUUGCGGgC- -5'
26266 3' -57.9 NC_005345.2 + 47613 0.7 0.355235
Target:  5'- cCCGGUUg-GCUCGAC----GCGCCCGa -3'
miRNA:   3'- -GGCCAGgaCGAGCUGcaguUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 47120 0.75 0.167447
Target:  5'- gCCGGgCCcGCUCGACGagGACGCCg- -3'
miRNA:   3'- -GGCCaGGaCGAGCUGCagUUGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 45194 0.73 0.246929
Target:  5'- cCCGGgggUC-GcCUCGACGUacaGACGCCCGg -3'
miRNA:   3'- -GGCCa--GGaC-GAGCUGCAg--UUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 44970 0.66 0.56511
Target:  5'- aCGG-CCUGC-CGcccCGUgAGCGCCUGc -3'
miRNA:   3'- gGCCaGGACGaGCu--GCAgUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 44284 0.66 0.607606
Target:  5'- gCCGGuagUCCccCUCGAUGUCGuCGCUCa -3'
miRNA:   3'- -GGCC---AGGacGAGCUGCAGUuGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 43405 0.67 0.54414
Target:  5'- cCCGGUUgUGgaCG-CGagugcccaaguUCGACGCCCGc -3'
miRNA:   3'- -GGCCAGgACgaGCuGC-----------AGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 43106 0.7 0.371978
Target:  5'- uCCGGUCCUGg--GGCGUCccggaccgGugGCCCa -3'
miRNA:   3'- -GGCCAGGACgagCUGCAG--------UugCGGGc -5'
26266 3' -57.9 NC_005345.2 + 42696 0.68 0.492957
Target:  5'- gCGG-CCcGCUCGAUGU--ACGUCCGc -3'
miRNA:   3'- gGCCaGGaCGAGCUGCAguUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 42065 0.69 0.389249
Target:  5'- aCCGG--CUGCUCGGCGaCAGCGUCg- -3'
miRNA:   3'- -GGCCagGACGAGCUGCaGUUGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 41712 1.1 0.000575
Target:  5'- uCCGGUCCUGCUCGACGUCAACGCCCGu -3'
miRNA:   3'- -GGCCAGGACGAGCUGCAGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 41349 0.69 0.416122
Target:  5'- aCGGcgUCCgGCggCGGCG-CAGCGCUCGg -3'
miRNA:   3'- gGCC--AGGaCGa-GCUGCaGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 41077 0.71 0.308255
Target:  5'- cCCGGccgCCUGCUCGGCGgCGA-GCuuGa -3'
miRNA:   3'- -GGCCa--GGACGAGCUGCaGUUgCGggC- -5'
26266 3' -57.9 NC_005345.2 + 40707 0.69 0.39808
Target:  5'- aCCGcGcCCgUGCUCGuCGUCGacaGCGaCCCGg -3'
miRNA:   3'- -GGC-CaGG-ACGAGCuGCAGU---UGC-GGGC- -5'
26266 3' -57.9 NC_005345.2 + 40705 0.71 0.328789
Target:  5'- gCCGGUgccguccguccacaCCgaccGCUCGGCGUCcagccGCGCCCc -3'
miRNA:   3'- -GGCCA--------------GGa---CGAGCUGCAGu----UGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 40102 0.71 0.331132
Target:  5'- gCCGcG-CCUGCUCGGUGUCAcACGCCg- -3'
miRNA:   3'- -GGC-CaGGACGAGCUGCAGU-UGCGGgc -5'
26266 3' -57.9 NC_005345.2 + 39244 0.69 0.407038
Target:  5'- cCCGGucauUCCUGCUCGcCGcCGAguucgGCCCGc -3'
miRNA:   3'- -GGCC----AGGACGAGCuGCaGUUg----CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 38391 0.68 0.463326
Target:  5'- aCGG-CCggcagggGCUCGGCGUCGGCGa-CGa -3'
miRNA:   3'- gGCCaGGa------CGAGCUGCAGUUGCggGC- -5'
26266 3' -57.9 NC_005345.2 + 37968 0.67 0.554596
Target:  5'- aUCGGgaUCCggugGCUCGACG-CGGCGagugCCGa -3'
miRNA:   3'- -GGCC--AGGa---CGAGCUGCaGUUGCg---GGC- -5'
26266 3' -57.9 NC_005345.2 + 37707 0.68 0.451736
Target:  5'- gCCaGUCCUGCgggaucgcgcugCGGCG-CGGCGCCgGc -3'
miRNA:   3'- -GGcCAGGACGa-----------GCUGCaGUUGCGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.