miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 3' -57.9 NC_005345.2 + 4608 0.67 0.523429
Target:  5'- gCGGUCCUGUUCc-CGU---UGCCCGg -3'
miRNA:   3'- gGCCAGGACGAGcuGCAguuGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 44970 0.66 0.56511
Target:  5'- aCGG-CCUGC-CGcccCGUgAGCGCCUGc -3'
miRNA:   3'- gGCCaGGACGaGCu--GCAgUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 36951 0.66 0.56511
Target:  5'- gCGaGUCCUcGCUCGuCGUCGA-GUCCc -3'
miRNA:   3'- gGC-CAGGA-CGAGCuGCAGUUgCGGGc -5'
26266 3' -57.9 NC_005345.2 + 43405 0.67 0.54414
Target:  5'- cCCGGUUgUGgaCG-CGagugcccaaguUCGACGCCCGc -3'
miRNA:   3'- -GGCCAGgACgaGCuGC-----------AGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 17472 0.67 0.537897
Target:  5'- aCGGgcugcgCCUGuCUCGGCGUCGGgaaggaacugcgggcCGCCgGu -3'
miRNA:   3'- gGCCa-----GGAC-GAGCUGCAGUU---------------GCGGgC- -5'
26266 3' -57.9 NC_005345.2 + 23406 0.67 0.533749
Target:  5'- gCCGGUucgCCUGCcaccacCG-CGACGCCCGg -3'
miRNA:   3'- -GGCCA---GGACGagcu--GCaGUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 14989 0.67 0.523429
Target:  5'- cUCGG-CCgagGaCUCGGaucCGUCGACuGCCCGg -3'
miRNA:   3'- -GGCCaGGa--C-GAGCU---GCAGUUG-CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 5870 0.67 0.523429
Target:  5'- gCCGcG-CCUGCUCGGgaGUCAugGCgUCGu -3'
miRNA:   3'- -GGC-CaGGACGAGCUg-CAGUugCG-GGC- -5'
26266 3' -57.9 NC_005345.2 + 20830 0.67 0.523429
Target:  5'- gUCGucGUCCUGgUCGuCGUCGccguCGCCCu -3'
miRNA:   3'- -GGC--CAGGACgAGCuGCAGUu---GCGGGc -5'
26266 3' -57.9 NC_005345.2 + 12255 0.66 0.56511
Target:  5'- cCCGGUCCcGCUU--CGUCGcgaGCCCc -3'
miRNA:   3'- -GGCCAGGaCGAGcuGCAGUug-CGGGc -5'
26266 3' -57.9 NC_005345.2 + 27884 0.66 0.575676
Target:  5'- cCCGG-CCggGUUCGACGUaca-GCUCGg -3'
miRNA:   3'- -GGCCaGGa-CGAGCUGCAguugCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 564 0.66 0.583098
Target:  5'- -gGGUCCUcGCccgccgcgagcucaUCGGCGcccgcauccgCGACGCCCGc -3'
miRNA:   3'- ggCCAGGA-CG--------------AGCUGCa---------GUUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 48468 0.66 0.607606
Target:  5'- uCCGGaagCCUGCgcCGAagagCAACGCCgGg -3'
miRNA:   3'- -GGCCa--GGACGa-GCUgca-GUUGCGGgC- -5'
26266 3' -57.9 NC_005345.2 + 44284 0.66 0.607606
Target:  5'- gCCGGuagUCCccCUCGAUGUCGuCGCUCa -3'
miRNA:   3'- -GGCC---AGGacGAGCUGCAGUuGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 34274 0.66 0.607606
Target:  5'- cUCGGcCCgacucGcCUCGgccGCGUCgAGCGCCCGc -3'
miRNA:   3'- -GGCCaGGa----C-GAGC---UGCAG-UUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 24634 0.66 0.606537
Target:  5'- gCCGGgcgCCUcGCg-GugGUCGACcaggaucccgcggGCCCGg -3'
miRNA:   3'- -GGCCa--GGA-CGagCugCAGUUG-------------CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 11192 0.66 0.596932
Target:  5'- aCCGGaUCCcgauccGCUCGggcaccgucgGCGUCGagGCGUCCGc -3'
miRNA:   3'- -GGCC-AGGa-----CGAGC----------UGCAGU--UGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 6182 0.66 0.596932
Target:  5'- cCCGGcCCgGUUCGuGCG-CGugcCGCCCGg -3'
miRNA:   3'- -GGCCaGGaCGAGC-UGCaGUu--GCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 24348 0.66 0.59054
Target:  5'- uCCGGUCgCccggcugcaccaccuUGC-CGAgGUCGgacgACGCCCGc -3'
miRNA:   3'- -GGCCAG-G---------------ACGaGCUgCAGU----UGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 17939 0.66 0.586285
Target:  5'- gUCGGUCCggaacUGUcCGGCGUC--CGCUCGg -3'
miRNA:   3'- -GGCCAGG-----ACGaGCUGCAGuuGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.