miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 31836 0.66 0.52752
Target:  5'- cAGCuGGUCAagGACggGUUCGCCCguCCGGCc -3'
miRNA:   3'- -UCG-UCAGUg-CUGa-CGAGUGGG--GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 6188 0.66 0.517024
Target:  5'- cGCAGUuccgcgcguucCGCGGCgcccugGC-CACCuCCCGAUa -3'
miRNA:   3'- uCGUCA-----------GUGCUGa-----CGaGUGG-GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 34630 0.66 0.506612
Target:  5'- cGGCGGUCGgGGCggUGCgcuGCUCCCGGu -3'
miRNA:   3'- -UCGUCAGUgCUG--ACGag-UGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 13202 0.66 0.506612
Target:  5'- cGGCAGcccgCGCGGCgaGCacacccCGCgCCCCGGCg -3'
miRNA:   3'- -UCGUCa---GUGCUGa-CGa-----GUG-GGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 3873 0.66 0.506612
Target:  5'- cGGC-GUCccuGCG-CUGCUCuCCgCCGACg -3'
miRNA:   3'- -UCGuCAG---UGCuGACGAGuGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 36042 0.66 0.495264
Target:  5'- gGGCAGUCcgggaucGCGAagaUGCUCGCgcaggUCCCGGg -3'
miRNA:   3'- -UCGUCAG-------UGCUg--ACGAGUG-----GGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 35629 0.66 0.493213
Target:  5'- cGCGGUCccagaacacgaucgACGGgUGCUCGCCgcgccaccgcaCCGACg -3'
miRNA:   3'- uCGUCAG--------------UGCUgACGAGUGGg----------GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 33338 0.66 0.486066
Target:  5'- cGCGGUCGCGGCguagccggcgUGC-CGCCCacaCCgGACg -3'
miRNA:   3'- uCGUCAGUGCUG----------ACGaGUGGG---GG-CUG- -5'
26268 5' -58.3 NC_005345.2 + 14339 0.66 0.486066
Target:  5'- gGGCAGgcgCACGGCgUGCgcgaggacCGCgaCCCGGCg -3'
miRNA:   3'- -UCGUCa--GUGCUG-ACGa-------GUGg-GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 17647 0.66 0.475942
Target:  5'- cGGuCGGUCACGACcgUGUUCgcgggGCCgCCGAUc -3'
miRNA:   3'- -UC-GUCAGUGCUG--ACGAG-----UGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 37855 0.66 0.475942
Target:  5'- cGGuCGGUCGCGGCcggcgagGCUCAggCCCgGACg -3'
miRNA:   3'- -UC-GUCAGUGCUGa------CGAGUg-GGGgCUG- -5'
26268 5' -58.3 NC_005345.2 + 8869 0.66 0.475942
Target:  5'- cGCGG-CAUGAC-GCUCuccggacucauGCCCgCCGGCg -3'
miRNA:   3'- uCGUCaGUGCUGaCGAG-----------UGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 5217 0.66 0.475942
Target:  5'- gGGCAGcUCGCGGCcgGcCUgAUCgCCGACg -3'
miRNA:   3'- -UCGUC-AGUGCUGa-C-GAgUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 34099 0.66 0.475942
Target:  5'- cGGCGccCGCGACgGCgacaUCGCCgCCGACg -3'
miRNA:   3'- -UCGUcaGUGCUGaCG----AGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 27848 0.67 0.465924
Target:  5'- cGguGUgGcCGAUccucgGCggCGCCCCCGACg -3'
miRNA:   3'- uCguCAgU-GCUGa----CGa-GUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 26515 0.67 0.465924
Target:  5'- uGCGGaCACGAUcGg-CGCCCUCGACa -3'
miRNA:   3'- uCGUCaGUGCUGaCgaGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 18367 0.67 0.465924
Target:  5'- cGCcGUCACaGgaGUaCACCCCCGAUg -3'
miRNA:   3'- uCGuCAGUGcUgaCGaGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 40696 0.67 0.465924
Target:  5'- cGGgAGUCGCGACcgcgcccgUGCUCGUCgUCGACa -3'
miRNA:   3'- -UCgUCAGUGCUG--------ACGAGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 31322 0.67 0.464928
Target:  5'- cGCGGUCugGAggGCggCcggacgugaccauGCCCCCGAUc -3'
miRNA:   3'- uCGUCAGugCUgaCGa-G-------------UGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 23707 0.67 0.456016
Target:  5'- gAGCGGUaCGgGGCUcugcGCUCGCuUCCUGGCg -3'
miRNA:   3'- -UCGUCA-GUgCUGA----CGAGUG-GGGGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.