miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 3' -56.7 NC_005345.2 + 3947 0.66 0.612597
Target:  5'- --cGCCgCGGCCGGCAgccucucgGGCG-GCa-- -3'
miRNA:   3'- aguUGG-GCCGGCUGUa-------CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 2828 0.66 0.612597
Target:  5'- cCAGCgCCgcgaGGCCGACA--GCGUGCg-- -3'
miRNA:   3'- aGUUG-GG----CCGGCUGUacCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 47824 0.66 0.612597
Target:  5'- gCGACCCGGCCGGCAaccagaaGCagaaaUGCUUu -3'
miRNA:   3'- aGUUGGGCCGGCUGUac-----CGc----ACGAAc -5'
26269 3' -56.7 NC_005345.2 + 1892 0.66 0.612597
Target:  5'- -aGACCCgcgaggcaGGCCGACGguuguacgGGCGUcggcuacuGCUUGu -3'
miRNA:   3'- agUUGGG--------CCGGCUGUa-------CCGCA--------CGAAC- -5'
26269 3' -56.7 NC_005345.2 + 7277 0.66 0.601587
Target:  5'- aCAGCCCGGaCGAUgacGGUGUGUa-- -3'
miRNA:   3'- aGUUGGGCCgGCUGua-CCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 14572 0.66 0.601587
Target:  5'- -gGGCCCGGCCGugucggcacuacACAaGGCGgagcgGCUc- -3'
miRNA:   3'- agUUGGGCCGGC------------UGUaCCGCa----CGAac -5'
26269 3' -56.7 NC_005345.2 + 769 0.66 0.590604
Target:  5'- aUAGcCCCGGCCGGCGgcgGGgGaUGCc-- -3'
miRNA:   3'- aGUU-GGGCCGGCUGUa--CCgC-ACGaac -5'
26269 3' -56.7 NC_005345.2 + 11191 0.66 0.590604
Target:  5'- gCAGCCUGGUCGACGccGGCcUGUg-- -3'
miRNA:   3'- aGUUGGGCCGGCUGUa-CCGcACGaac -5'
26269 3' -56.7 NC_005345.2 + 35338 0.66 0.579656
Target:  5'- aUCGGCgCGGCCGGC---GCGUGgaUGu -3'
miRNA:   3'- -AGUUGgGCCGGCUGuacCGCACgaAC- -5'
26269 3' -56.7 NC_005345.2 + 21329 0.66 0.579656
Target:  5'- aCAGCUCGGUCGGguccucgccCGUGcGCG-GCUUGc -3'
miRNA:   3'- aGUUGGGCCGGCU---------GUAC-CGCaCGAAC- -5'
26269 3' -56.7 NC_005345.2 + 16861 0.66 0.568751
Target:  5'- gCAGCUgcaggcgcgguaCGGCCGAgCGUGGCG-GCg-- -3'
miRNA:   3'- aGUUGG------------GCCGGCU-GUACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 3854 0.67 0.547105
Target:  5'- -gGACCCGGCUGAUc-GGCGUcgGCg-- -3'
miRNA:   3'- agUUGGGCCGGCUGuaCCGCA--CGaac -5'
26269 3' -56.7 NC_005345.2 + 32988 0.67 0.53638
Target:  5'- cUCGGCgcaggCGGCCGGgGUGGCGgggGCg-- -3'
miRNA:   3'- -AGUUGg----GCCGGCUgUACCGCa--CGaac -5'
26269 3' -56.7 NC_005345.2 + 14690 0.67 0.525728
Target:  5'- cCGGgCCGGCCGugccCGUGGUGUgGCg-- -3'
miRNA:   3'- aGUUgGGCCGGCu---GUACCGCA-CGaac -5'
26269 3' -56.7 NC_005345.2 + 9325 0.67 0.522548
Target:  5'- gCGACCCGGgCGgcgaccagugcgacGCAUGGUG-GCUg- -3'
miRNA:   3'- aGUUGGGCCgGC--------------UGUACCGCaCGAac -5'
26269 3' -56.7 NC_005345.2 + 42853 0.67 0.515157
Target:  5'- -gAACCCGGCCGGgAUgaaGGCG-GCc-- -3'
miRNA:   3'- agUUGGGCCGGCUgUA---CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 6939 0.67 0.515157
Target:  5'- aCuuCCCGGUCGuCAUGGUgGUGCc-- -3'
miRNA:   3'- aGuuGGGCCGGCuGUACCG-CACGaac -5'
26269 3' -56.7 NC_005345.2 + 23611 0.67 0.504673
Target:  5'- gCGACgCCGGCgGACcgGGCacgGCUg- -3'
miRNA:   3'- aGUUG-GGCCGgCUGuaCCGca-CGAac -5'
26269 3' -56.7 NC_005345.2 + 6177 0.67 0.504673
Target:  5'- aCAcGCCCGGCCcgguuCGUGcGCGUGCc-- -3'
miRNA:   3'- aGU-UGGGCCGGcu---GUAC-CGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 41543 0.68 0.494282
Target:  5'- gCGACCUGGUCGACGacGuCGUGCg-- -3'
miRNA:   3'- aGUUGGGCCGGCUGUacC-GCACGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.