Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26270 | 5' | -58 | NC_005345.2 | + | 6478 | 0.69 | 0.350938 |
|
Target: 5'- cGaGCUGuACGGCGGCgaGCCCGaggcGUGg -3' miRNA: 3'- uC-CGACuUGUCGCCGa-CGGGCau--CAC- -5' |
|||||||
| 26270 | 5' | -58 | NC_005345.2 | + | 38726 | 0.7 | 0.303013 |
|
Target: 5'- cGGCUGGACGGUGGUa-UCCGgGGUGg -3' miRNA: 3'- uCCGACUUGUCGCCGacGGGCaUCAC- -5' |
|||||||
| 26270 | 5' | -58 | NC_005345.2 | + | 14668 | 0.7 | 0.27326 |
|
Target: 5'- cGGCcGGGCGGCgucgccgaugccgGGCcggccgUGCCCGUGGUGu -3' miRNA: 3'- uCCGaCUUGUCG-------------CCG------ACGGGCAUCAC- -5' |
|||||||
| 26270 | 5' | -58 | NC_005345.2 | + | 20255 | 0.77 | 0.100071 |
|
Target: 5'- gAGGCaUGGacgaccucgcGCAGUGGC-GCCCGUAGUGc -3' miRNA: 3'- -UCCG-ACU----------UGUCGCCGaCGGGCAUCAC- -5' |
|||||||
| 26270 | 5' | -58 | NC_005345.2 | + | 35590 | 0.66 | 0.520631 |
|
Target: 5'- aAGGCgugGGACAGCgucgucaaggugucGGCgaaGCCCGUGa-- -3' miRNA: 3'- -UCCGa--CUUGUCG--------------CCGa--CGGGCAUcac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home