miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26275 3' -63.5 NC_005345.2 + 25683 0.65 0.336592
Target:  5'- -gGCCuGCGGcGaCUCaauccacaucgcccACCaCUCGCGGGUg -3'
miRNA:   3'- agCGG-CGCC-CaGAG--------------UGG-GAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 18646 0.66 0.331228
Target:  5'- cUCGcCCGCGGGUCgcuguccggCAgCCUCaccgaagaGGGUg -3'
miRNA:   3'- -AGC-GGCGCCCAGa--------GUgGGAGcg------CCCG- -5'
26275 3' -63.5 NC_005345.2 + 10013 0.66 0.331228
Target:  5'- cUCGCCGCGGccgaUUUCAaCUgcgcaUGCGGGCu -3'
miRNA:   3'- -AGCGGCGCCc---AGAGUgGGa----GCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 37509 0.66 0.331228
Target:  5'- cCGCCGUgcaGGcGUCUaUGCCugCUCGgCGGGCu -3'
miRNA:   3'- aGCGGCG---CC-CAGA-GUGG--GAGC-GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 1462 0.66 0.331228
Target:  5'- cUGCCGUGGGUUguucgUCGCUCUaggCGCcauGGGUc -3'
miRNA:   3'- aGCGGCGCCCAG-----AGUGGGA---GCG---CCCG- -5'
26275 3' -63.5 NC_005345.2 + 24305 0.66 0.331228
Target:  5'- aCGCCGCGGGaC-CGCUUgCGCGaGCc -3'
miRNA:   3'- aGCGGCGCCCaGaGUGGGaGCGCcCG- -5'
26275 3' -63.5 NC_005345.2 + 30870 0.66 0.331228
Target:  5'- -aGCgCGCGGGU---GCuCCgggUGCGGGCg -3'
miRNA:   3'- agCG-GCGCCCAgagUG-GGa--GCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 20044 0.66 0.323675
Target:  5'- -aGCCGCGGcGgauggUUCacggaGCCCUCGaagcccacccCGGGCa -3'
miRNA:   3'- agCGGCGCC-Ca----GAG-----UGGGAGC----------GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 42051 0.66 0.323675
Target:  5'- aCGUCGCGGGccgUUUCgACCgUCGUgcacuuccGGGCc -3'
miRNA:   3'- aGCGGCGCCC---AGAG-UGGgAGCG--------CCCG- -5'
26275 3' -63.5 NC_005345.2 + 11115 0.66 0.323675
Target:  5'- gUCGCCGCGcagCUCACCga--CGGGCu -3'
miRNA:   3'- -AGCGGCGCccaGAGUGGgagcGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 40122 0.66 0.32218
Target:  5'- gUCGCCguccuucugGCGGGUCUUgAUCCgcaccgugcugcCGuCGGGCa -3'
miRNA:   3'- -AGCGG---------CGCCCAGAG-UGGGa-----------GC-GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 35558 0.66 0.316251
Target:  5'- cCGCCuuCGGG-CUCGCCCgggaCGCGaucucgaaGGCg -3'
miRNA:   3'- aGCGGc-GCCCaGAGUGGGa---GCGC--------CCG- -5'
26275 3' -63.5 NC_005345.2 + 46391 0.66 0.316251
Target:  5'- cCGCCGCGcGUggCGCgCUCcacauGCGGGCc -3'
miRNA:   3'- aGCGGCGCcCAgaGUGgGAG-----CGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 24942 0.66 0.316251
Target:  5'- cCGCCGCGaucgaaCUCgGCCC-CGaCGGGCg -3'
miRNA:   3'- aGCGGCGCcca---GAG-UGGGaGC-GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 19894 0.66 0.316251
Target:  5'- aUGuuGCGGG-CgagcCGCUgcgcaUCGCGGGCg -3'
miRNA:   3'- aGCggCGCCCaGa---GUGGg----AGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 6381 0.66 0.311858
Target:  5'- gCGuuGCGGucccaugugaugugcGgaaUCGCUUUCGCGGGCc -3'
miRNA:   3'- aGCggCGCC---------------Cag-AGUGGGAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 1580 0.66 0.308233
Target:  5'- cCGCCGUGGGggccgUCACgagcguuCCUUGCGGucGCg -3'
miRNA:   3'- aGCGGCGCCCag---AGUG-------GGAGCGCC--CG- -5'
26275 3' -63.5 NC_005345.2 + 5189 0.66 0.308233
Target:  5'- cUCGCC-CGaGGUC-CGCCC-CGgcacggcCGGGCa -3'
miRNA:   3'- -AGCGGcGC-CCAGaGUGGGaGC-------GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 18219 0.66 0.30464
Target:  5'- gCGCCGCguucggguacGGG-CUCGCCCuggucccggugcugcUCGCcGGCc -3'
miRNA:   3'- aGCGGCG----------CCCaGAGUGGG---------------AGCGcCCG- -5'
26275 3' -63.5 NC_005345.2 + 31204 0.66 0.301789
Target:  5'- gUGCgGCGGGUgcgCACCCggGUGcGGCc -3'
miRNA:   3'- aGCGgCGCCCAga-GUGGGagCGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.