Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26275 | 5' | -57.6 | NC_005345.2 | + | 47636 | 0.65 | 0.591204 |
Target: 5'- cUGCCCcgcguucccgaacaGCGGAGGaGCGGACagguGACC-Ca -3' miRNA: 3'- aGCGGG--------------UGUCUCCaUGCCUG----CUGGaG- -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 44393 | 0.66 | 0.540845 |
Target: 5'- -gGCCCACcauGAcGGUAUGGGCGguuCUCg -3' miRNA: 3'- agCGGGUGu--CU-CCAUGCCUGCug-GAG- -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 34229 | 0.66 | 0.540845 |
Target: 5'- uUCGCCCGgGGcGGcACGGccgcgaacGCGGuCCUCg -3' miRNA: 3'- -AGCGGGUgUCuCCaUGCC--------UGCU-GGAG- -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 28302 | 0.66 | 0.540845 |
Target: 5'- gCGCCCGCcaAGGgcgACGGcgacgACGACCa- -3' miRNA: 3'- aGCGGGUGucUCCa--UGCC-----UGCUGGag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 37566 | 0.66 | 0.540845 |
Target: 5'- -gGCCCgaggcgggcGCAGGcGGgcugcagGCGGGCGACCg- -3' miRNA: 3'- agCGGG---------UGUCU-CCa------UGCCUGCUGGag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 11685 | 0.66 | 0.540845 |
Target: 5'- cUCGCCCgcgcuGCAGGcGGaucgACGGcCGACCa- -3' miRNA: 3'- -AGCGGG-----UGUCU-CCa---UGCCuGCUGGag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 8731 | 0.66 | 0.56213 |
Target: 5'- gUCGCCgGCGGcgauccGUACGGACG-CgUCg -3' miRNA: 3'- -AGCGGgUGUCuc----CAUGCCUGCuGgAG- -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 3826 | 0.66 | 0.56213 |
Target: 5'- gUCGUCCGCugcGAGGUcgGCGG-CGugCg- -3' miRNA: 3'- -AGCGGGUGu--CUCCA--UGCCuGCugGag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 31343 | 0.66 | 0.577165 |
Target: 5'- aCGCCgGCAGggaugauccggcucgGGGUGauCGGGCGAUCg- -3' miRNA: 3'- aGCGGgUGUC---------------UCCAU--GCCUGCUGGag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 16649 | 0.66 | 0.550392 |
Target: 5'- cCGCCgGCAGAGGgACGGcaccggaGCG-CCgUCa -3' miRNA: 3'- aGCGGgUGUCUCCaUGCC-------UGCuGG-AG- -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 5240 | 0.66 | 0.56213 |
Target: 5'- gUGCCCGCGGuacacgguGGgcgugACGGGCGGCa-- -3' miRNA: 3'- aGCGGGUGUCu-------CCa----UGCCUGCUGgag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 9725 | 0.66 | 0.56213 |
Target: 5'- gUCGCC----GGGGUcgaGCGGGuCGGCCUCg -3' miRNA: 3'- -AGCGGguguCUCCA---UGCCU-GCUGGAG- -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 40222 | 0.67 | 0.530302 |
Target: 5'- cCGCCCACGGGGG--CGGcCG-CCg- -3' miRNA: 3'- aGCGGGUGUCUCCauGCCuGCuGGag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 19739 | 0.67 | 0.488953 |
Target: 5'- aCGCCCGCGaggcgaccGAGGccgagGCGG-CGGCCg- -3' miRNA: 3'- aGCGGGUGU--------CUCCa----UGCCuGCUGGag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 4805 | 0.67 | 0.488953 |
Target: 5'- aUCGCCCcccgGCAGcucggcgauuucGGGUACgccucgauGGGCGACCg- -3' miRNA: 3'- -AGCGGG----UGUC------------UCCAUG--------CCUGCUGGag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 30870 | 0.67 | 0.487938 |
Target: 5'- -aGCgCGCGGgugcuccGGGUGCGGGCGACg-- -3' miRNA: 3'- agCGgGUGUC-------UCCAUGCCUGCUGgag -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 6645 | 0.67 | 0.488953 |
Target: 5'- cCGCgCGgAGAGGgcACGGGCGAacguggcgaucuCCUCg -3' miRNA: 3'- aGCGgGUgUCUCCa-UGCCUGCU------------GGAG- -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 37328 | 0.67 | 0.495063 |
Target: 5'- cUCGCCCACGGuccGGUugucgaacgccgcgGCGuGcccgagcagcuuuGCGGCCUCg -3' miRNA: 3'- -AGCGGGUGUCu--CCA--------------UGC-C-------------UGCUGGAG- -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 2751 | 0.67 | 0.509452 |
Target: 5'- -gGCCCGCAuGuGGaGCGcgccacgcgcGGCGGCCUCg -3' miRNA: 3'- agCGGGUGU-CuCCaUGC----------CUGCUGGAG- -5' |
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26275 | 5' | -57.6 | NC_005345.2 | + | 31838 | 0.67 | 0.519836 |
Target: 5'- gCaCCCGCGGcGGGUGCGG-CGcACCUg -3' miRNA: 3'- aGcGGGUGUC-UCCAUGCCuGC-UGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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