miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26275 5' -57.6 NC_005345.2 + 1686 0.75 0.175587
Target:  5'- aUCGCCCACAGGucgccgacagauuGGgccgGCGaGACGACCg- -3'
miRNA:   3'- -AGCGGGUGUCU-------------CCa---UGC-CUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 2751 0.67 0.509452
Target:  5'- -gGCCCGCAuGuGGaGCGcgccacgcgcGGCGGCCUCg -3'
miRNA:   3'- agCGGGUGU-CuCCaUGC----------CUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 2994 0.67 0.530302
Target:  5'- aCGUCgGC---GGUACGGGCGGCCg- -3'
miRNA:   3'- aGCGGgUGucuCCAUGCCUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 3314 0.74 0.188725
Target:  5'- gUCGCCCGCGccgccgccgugcacGucacGGUcgcgacgACGGACGACCUCg -3'
miRNA:   3'- -AGCGGGUGU--------------Cu---CCA-------UGCCUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 3826 0.66 0.56213
Target:  5'- gUCGUCCGCugcGAGGUcgGCGG-CGugCg- -3'
miRNA:   3'- -AGCGGGUGu--CUCCA--UGCCuGCugGag -5'
26275 5' -57.6 NC_005345.2 + 3899 0.7 0.333605
Target:  5'- aCGCUCGCAGuguggGGGUGCGccguggcuGACGACCg- -3'
miRNA:   3'- aGCGGGUGUC-----UCCAUGC--------CUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 4805 0.67 0.488953
Target:  5'- aUCGCCCcccgGCAGcucggcgauuucGGGUACgccucgauGGGCGACCg- -3'
miRNA:   3'- -AGCGGG----UGUC------------UCCAUG--------CCUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 5240 0.66 0.56213
Target:  5'- gUGCCCGCGGuacacgguGGgcgugACGGGCGGCa-- -3'
miRNA:   3'- aGCGGGUGUCu-------CCa----UGCCUGCUGgag -5'
26275 5' -57.6 NC_005345.2 + 5834 0.68 0.420548
Target:  5'- cUCGCCCGCu--GGUuccggcugugGCGcGuCGACCUCg -3'
miRNA:   3'- -AGCGGGUGucuCCA----------UGC-CuGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 6645 0.67 0.488953
Target:  5'- cCGCgCGgAGAGGgcACGGGCGAacguggcgaucuCCUCg -3'
miRNA:   3'- aGCGgGUgUCUCCa-UGCCUGCU------------GGAG- -5'
26275 5' -57.6 NC_005345.2 + 7403 0.68 0.439514
Target:  5'- -gGCCCGCAu-GGUcGCGuuCGACCUCg -3'
miRNA:   3'- agCGGGUGUcuCCA-UGCcuGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 8509 0.68 0.439514
Target:  5'- gCGUCCacugGCAGuGG-ACGGGCcGCCUCg -3'
miRNA:   3'- aGCGGG----UGUCuCCaUGCCUGcUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 8731 0.66 0.56213
Target:  5'- gUCGCCgGCGGcgauccGUACGGACG-CgUCg -3'
miRNA:   3'- -AGCGGgUGUCuc----CAUGCCUGCuGgAG- -5'
26275 5' -57.6 NC_005345.2 + 9725 0.66 0.56213
Target:  5'- gUCGCC----GGGGUcgaGCGGGuCGGCCUCg -3'
miRNA:   3'- -AGCGGguguCUCCA---UGCCU-GCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 11568 0.68 0.420548
Target:  5'- aUCGCCCgGCAGcucgacgACGGGCG-CCUCg -3'
miRNA:   3'- -AGCGGG-UGUCucca---UGCCUGCuGGAG- -5'
26275 5' -57.6 NC_005345.2 + 11685 0.66 0.540845
Target:  5'- cUCGCCCgcgcuGCAGGcGGaucgACGGcCGACCa- -3'
miRNA:   3'- -AGCGGG-----UGUCU-CCa---UGCCuGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 12461 0.67 0.478849
Target:  5'- -aGCUCGCGGggcAGGcgagGCGcGACGAUCUCg -3'
miRNA:   3'- agCGGGUGUC---UCCa---UGC-CUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 12628 0.68 0.469844
Target:  5'- uUCGCCCACccacgccaguucgccGGGGcGCGGuCGGCCg- -3'
miRNA:   3'- -AGCGGGUGu--------------CUCCaUGCCuGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 14625 0.71 0.317876
Target:  5'- aCGCCCGC-GAGGccGCGGcCcGCCUCg -3'
miRNA:   3'- aGCGGGUGuCUCCa-UGCCuGcUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 16171 0.68 0.449177
Target:  5'- cCGCCUGCGccGAGGacuacGCGGACGcggccggcguccGCCUCg -3'
miRNA:   3'- aGCGGGUGU--CUCCa----UGCCUGC------------UGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.