miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26275 5' -57.6 NC_005345.2 + 33164 1.1 0.000435
Target:  5'- gUCGCCCACAGAGGUACGGACGACCUCg -3'
miRNA:   3'- -AGCGGGUGUCUCCAUGCCUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 20235 0.8 0.070324
Target:  5'- aUCGCCUGCGuggcacgaucGAGGcAUGGACGACCUCg -3'
miRNA:   3'- -AGCGGGUGU----------CUCCaUGCCUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 28740 0.75 0.15805
Target:  5'- gCGCCCACggcgGGAGGUACGGcGgGGCCg- -3'
miRNA:   3'- aGCGGGUG----UCUCCAUGCC-UgCUGGag -5'
26275 5' -57.6 NC_005345.2 + 1686 0.75 0.175587
Target:  5'- aUCGCCCACAGGucgccgacagauuGGgccgGCGaGACGACCg- -3'
miRNA:   3'- -AGCGGGUGUCU-------------CCa---UGC-CUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 3314 0.74 0.188725
Target:  5'- gUCGCCCGCGccgccgccgugcacGucacGGUcgcgacgACGGACGACCUCg -3'
miRNA:   3'- -AGCGGGUGU--------------Cu---CCA-------UGCCUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 45218 0.72 0.267255
Target:  5'- aCGCCCggucACGGGGGUGCGGuCGucaGCCa- -3'
miRNA:   3'- aGCGGG----UGUCUCCAUGCCuGC---UGGag -5'
26275 5' -57.6 NC_005345.2 + 33421 0.72 0.267255
Target:  5'- cUGUUCACAGcAGGgugGCGGGCGGCC-Cg -3'
miRNA:   3'- aGCGGGUGUC-UCCa--UGCCUGCUGGaG- -5'
26275 5' -57.6 NC_005345.2 + 29419 0.71 0.29534
Target:  5'- gUCGCCuCGCGGGcGuUGCGGGCGucguCCUCg -3'
miRNA:   3'- -AGCGG-GUGUCUcC-AUGCCUGCu---GGAG- -5'
26275 5' -57.6 NC_005345.2 + 42567 0.71 0.317876
Target:  5'- uUCGCCUgcgACAGGGGgucgcCGGGCGGCaggaUCg -3'
miRNA:   3'- -AGCGGG---UGUCUCCau---GCCUGCUGg---AG- -5'
26275 5' -57.6 NC_005345.2 + 14625 0.71 0.317876
Target:  5'- aCGCCCGC-GAGGccGCGGcCcGCCUCg -3'
miRNA:   3'- aGCGGGUGuCUCCa-UGCCuGcUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 48880 0.7 0.332007
Target:  5'- uUCGCCgGCcgacguggcggcGAGGUGCGGGCGGCg-- -3'
miRNA:   3'- -AGCGGgUGu-----------CUCCAUGCCUGCUGgag -5'
26275 5' -57.6 NC_005345.2 + 3899 0.7 0.333605
Target:  5'- aCGCUCGCAGuguggGGGUGCGccguggcuGACGACCg- -3'
miRNA:   3'- aGCGGGUGUC-----UCCAUGC--------CUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 16929 0.7 0.341681
Target:  5'- -gGCUCAU-GAGGUACGGcCGGCCg- -3'
miRNA:   3'- agCGGGUGuCUCCAUGCCuGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 27718 0.7 0.341681
Target:  5'- gUGUCCGCAGAc--GCGGcCGGCCUCg -3'
miRNA:   3'- aGCGGGUGUCUccaUGCCuGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 20337 0.69 0.364184
Target:  5'- cUGCCCACGGucaAGGUGCugugggagcgacggGGACGcgucaugcGCCUCa -3'
miRNA:   3'- aGCGGGUGUC---UCCAUG--------------CCUGC--------UGGAG- -5'
26275 5' -57.6 NC_005345.2 + 18974 0.69 0.384147
Target:  5'- cUCG-CCGCAuGGGUcgccgcuggccgGCgGGACGACCUCg -3'
miRNA:   3'- -AGCgGGUGUcUCCA------------UG-CCUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 19229 0.69 0.39305
Target:  5'- cUCGCCCuGCucuucGAGGUGCucGGCGACCg- -3'
miRNA:   3'- -AGCGGG-UGu----CUCCAUGc-CUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 11568 0.68 0.420548
Target:  5'- aUCGCCCgGCAGcucgacgACGGGCG-CCUCg -3'
miRNA:   3'- -AGCGGG-UGUCucca---UGCCUGCuGGAG- -5'
26275 5' -57.6 NC_005345.2 + 5834 0.68 0.420548
Target:  5'- cUCGCCCGCu--GGUuccggcugugGCGcGuCGACCUCg -3'
miRNA:   3'- -AGCGGGUGucuCCA----------UGC-CuGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 38694 0.68 0.420548
Target:  5'- gCGCUCGCAGAaucucGGUgagcugcgcaacGCGGugguugucgcgcGCGACCUCg -3'
miRNA:   3'- aGCGGGUGUCU-----CCA------------UGCC------------UGCUGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.