miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26275 5' -57.6 NC_005345.2 + 20235 0.8 0.070324
Target:  5'- aUCGCCUGCGuggcacgaucGAGGcAUGGACGACCUCg -3'
miRNA:   3'- -AGCGGGUGU----------CUCCaUGCCUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 12461 0.67 0.478849
Target:  5'- -aGCUCGCGGggcAGGcgagGCGcGACGAUCUCg -3'
miRNA:   3'- agCGGGUGUC---UCCa---UGC-CUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 19739 0.67 0.488953
Target:  5'- aCGCCCGCGaggcgaccGAGGccgagGCGG-CGGCCg- -3'
miRNA:   3'- aGCGGGUGU--------CUCCa----UGCCuGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 8731 0.66 0.56213
Target:  5'- gUCGCCgGCGGcgauccGUACGGACG-CgUCg -3'
miRNA:   3'- -AGCGGgUGUCuc----CAUGCCUGCuGgAG- -5'
26275 5' -57.6 NC_005345.2 + 16929 0.7 0.341681
Target:  5'- -gGCUCAU-GAGGUACGGcCGGCCg- -3'
miRNA:   3'- agCGGGUGuCUCCAUGCCuGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 20337 0.69 0.364184
Target:  5'- cUGCCCACGGucaAGGUGCugugggagcgacggGGACGcgucaugcGCCUCa -3'
miRNA:   3'- aGCGGGUGUC---UCCAUG--------------CCUGC--------UGGAG- -5'
26275 5' -57.6 NC_005345.2 + 19229 0.69 0.39305
Target:  5'- cUCGCCCuGCucuucGAGGUGCucGGCGACCg- -3'
miRNA:   3'- -AGCGGG-UGu----CUCCAUGc-CUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 5834 0.68 0.420548
Target:  5'- cUCGCCCGCu--GGUuccggcugugGCGcGuCGACCUCg -3'
miRNA:   3'- -AGCGGGUGucuCCA----------UGC-CuGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 30375 0.68 0.438554
Target:  5'- -aGCCCGCGGcgggcgcAGGU-CGaGGCGuACCUCg -3'
miRNA:   3'- agCGGGUGUC-------UCCAuGC-CUGC-UGGAG- -5'
26275 5' -57.6 NC_005345.2 + 19067 0.68 0.468849
Target:  5'- gUCGCCUACGGGGucuacgcgaucGUGCGGGCcguGCCg- -3'
miRNA:   3'- -AGCGGGUGUCUC-----------CAUGCCUGc--UGGag -5'
26275 5' -57.6 NC_005345.2 + 8509 0.68 0.439514
Target:  5'- gCGUCCacugGCAGuGG-ACGGGCcGCCUCg -3'
miRNA:   3'- aGCGGG----UGUCuCCaUGCCUGcUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 46180 0.68 0.42997
Target:  5'- aUCGCCUACAa--GUACGGcgcgaACGACCUUu -3'
miRNA:   3'- -AGCGGGUGUcucCAUGCC-----UGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 3314 0.74 0.188725
Target:  5'- gUCGCCCGCGccgccgccgugcacGucacGGUcgcgacgACGGACGACCUCg -3'
miRNA:   3'- -AGCGGGUGU--------------Cu---CCA-------UGCCUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 19397 0.68 0.449177
Target:  5'- gUGCCCACccgcGGGGUGCuccguGACGcCCUCu -3'
miRNA:   3'- aGCGGGUGu---CUCCAUGc----CUGCuGGAG- -5'
26275 5' -57.6 NC_005345.2 + 14625 0.71 0.317876
Target:  5'- aCGCCCGC-GAGGccGCGGcCcGCCUCg -3'
miRNA:   3'- aGCGGGUGuCUCCa-UGCCuGcUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 11568 0.68 0.420548
Target:  5'- aUCGCCCgGCAGcucgacgACGGGCG-CCUCg -3'
miRNA:   3'- -AGCGGG-UGUCucca---UGCCUGCuGGAG- -5'
26275 5' -57.6 NC_005345.2 + 16171 0.68 0.449177
Target:  5'- cCGCCUGCGccGAGGacuacGCGGACGcggccggcguccGCCUCg -3'
miRNA:   3'- aGCGGGUGU--CUCCa----UGCCUGC------------UGGAG- -5'
26275 5' -57.6 NC_005345.2 + 4805 0.67 0.488953
Target:  5'- aUCGCCCcccgGCAGcucggcgauuucGGGUACgccucgauGGGCGACCg- -3'
miRNA:   3'- -AGCGGG----UGUC------------UCCAUG--------CCUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 3899 0.7 0.333605
Target:  5'- aCGCUCGCAGuguggGGGUGCGccguggcuGACGACCg- -3'
miRNA:   3'- aGCGGGUGUC-----UCCAUGC--------CUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 18974 0.69 0.384147
Target:  5'- cUCG-CCGCAuGGGUcgccgcuggccgGCgGGACGACCUCg -3'
miRNA:   3'- -AGCgGGUGUcUCCA------------UG-CCUGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.