Results 1 - 20 of 186 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 45639 | 0.66 | 0.726078 |
Target: 5'- cGCAGUUCGCUCAuGACguccucgccugcgaCGACCgGGCAg -3' miRNA: 3'- -CGUCGGGCGAGU-UUGa-------------GCUGG-CUGUg -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 39834 | 0.66 | 0.700075 |
Target: 5'- uCGGCaUCGCg--GGCUCGGCCGGcCGCa -3' miRNA: 3'- cGUCG-GGCGaguUUGAGCUGGCU-GUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 43419 | 0.66 | 0.700075 |
Target: 5'- uGCGGCCCG---GAACaCGGCCGGCcugGCg -3' miRNA: 3'- -CGUCGGGCgagUUUGaGCUGGCUG---UG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 42272 | 0.66 | 0.721778 |
Target: 5'- cCAuUCCGC-CGuccacCUCGACCGGCGCg -3' miRNA: 3'- cGUcGGGCGaGUuu---GAGCUGGCUGUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 31117 | 0.66 | 0.678102 |
Target: 5'- cGUGGCCgCGUUCcugcGCUCGcCCGGCGu -3' miRNA: 3'- -CGUCGG-GCGAGuu--UGAGCuGGCUGUg -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 38701 | 0.66 | 0.678102 |
Target: 5'- aCAGCUCGUUCGAGCagggggUCG-CCGGCu- -3' miRNA: 3'- cGUCGGGCGAGUUUG------AGCuGGCUGug -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 10225 | 0.66 | 0.689117 |
Target: 5'- aGCAcgacCCCGUcgaggUCAAGCUCGAcaCCGGgGCa -3' miRNA: 3'- -CGUc---GGGCG-----AGUUUGAGCU--GGCUgUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 23677 | 0.66 | 0.689117 |
Target: 5'- cGCGGCCgG-UCGGGCg-GGCCGAgCGCa -3' miRNA: 3'- -CGUCGGgCgAGUUUGagCUGGCU-GUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 42524 | 0.66 | 0.689117 |
Target: 5'- cGCGGCUCGgcaccgacaUCAcgAGCaUCGuCCGACACg -3' miRNA: 3'- -CGUCGGGCg--------AGU--UUG-AGCuGGCUGUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 31495 | 0.66 | 0.676998 |
Target: 5'- gGCGGcCCCGCgaaCAcggucguGAC-CGACCGGcCGCg -3' miRNA: 3'- -CGUC-GGGCGa--GU-------UUGaGCUGGCU-GUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 13456 | 0.66 | 0.678102 |
Target: 5'- gGCAGCuuGCcCAGAC-CGAcgaacCCGGCGa -3' miRNA: 3'- -CGUCGggCGaGUUUGaGCU-----GGCUGUg -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 3398 | 0.66 | 0.678102 |
Target: 5'- gGCGGCgaGUUCGGGCUgagagaggCGGCgGGCGCg -3' miRNA: 3'- -CGUCGggCGAGUUUGA--------GCUGgCUGUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 25079 | 0.66 | 0.721778 |
Target: 5'- aCGGCCgGC-CGAucgGCUCG-CCGuACGCg -3' miRNA: 3'- cGUCGGgCGaGUU---UGAGCuGGC-UGUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 9621 | 0.66 | 0.721778 |
Target: 5'- uGCAcGaCCUGCUCGA--UCGGCCGGgucCACu -3' miRNA: 3'- -CGU-C-GGGCGAGUUugAGCUGGCU---GUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 41072 | 0.66 | 0.710966 |
Target: 5'- uGCAGCCCgGCcgCcuGCUCGG-CGGCGa -3' miRNA: 3'- -CGUCGGG-CGa-GuuUGAGCUgGCUGUg -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 40523 | 0.66 | 0.710966 |
Target: 5'- aGCAGUcacgaCUGCUCAccCcCGACCGGgGCg -3' miRNA: 3'- -CGUCG-----GGCGAGUuuGaGCUGGCUgUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 10180 | 0.66 | 0.689117 |
Target: 5'- gGUGGUCgCGC-CGAuCUCGACCG-CGCu -3' miRNA: 3'- -CGUCGG-GCGaGUUuGAGCUGGCuGUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 48181 | 0.66 | 0.678102 |
Target: 5'- cCGGgCCGCcgUCAAGgaCGGCCGGCGu -3' miRNA: 3'- cGUCgGGCG--AGUUUgaGCUGGCUGUg -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 43850 | 0.66 | 0.678102 |
Target: 5'- --uGCCCGgUCGAcgggGCgUCGGCCGGgACu -3' miRNA: 3'- cguCGGGCgAGUU----UG-AGCUGGCUgUG- -5' |
|||||||
26277 | 3' | -54.9 | NC_005345.2 | + | 13070 | 0.66 | 0.678102 |
Target: 5'- uCAGCCCGC-CGAGCaUCuuccccggGACCuGCGCg -3' miRNA: 3'- cGUCGGGCGaGUUUG-AG--------CUGGcUGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home