miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26277 3' -54.9 NC_005345.2 + 32150 1.12 0.000571
Target:  5'- gGCAGCCCGCUCAAACUCGACCGACACg -3'
miRNA:   3'- -CGUCGGGCGAGUUUGAGCUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 25579 0.83 0.063847
Target:  5'- cGCAGCCgcaGCUCGGACgCGGCCGACAg -3'
miRNA:   3'- -CGUCGGg--CGAGUUUGaGCUGGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 10737 0.8 0.110616
Target:  5'- -uGGCCgCGCUCGAugUCGucGCCGACGCc -3'
miRNA:   3'- cgUCGG-GCGAGUUugAGC--UGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 27106 0.8 0.117095
Target:  5'- cGCGGUCgGCUCGugAGCUCGGCCGGgACc -3'
miRNA:   3'- -CGUCGGgCGAGU--UUGAGCUGGCUgUG- -5'
26277 3' -54.9 NC_005345.2 + 16305 0.78 0.146696
Target:  5'- gGCAGCCCGaucgcCUCGAACUCGGCC--CACu -3'
miRNA:   3'- -CGUCGGGC-----GAGUUUGAGCUGGcuGUG- -5'
26277 3' -54.9 NC_005345.2 + 39292 0.78 0.150844
Target:  5'- aGCAGCCCcuGCUCGugccaguGCUCGACgaGACACc -3'
miRNA:   3'- -CGUCGGG--CGAGUu------UGAGCUGg-CUGUG- -5'
26277 3' -54.9 NC_005345.2 + 40763 0.78 0.150844
Target:  5'- aGCGGCUCG-UCGGGCcggUCGGCCGGCGCg -3'
miRNA:   3'- -CGUCGGGCgAGUUUG---AGCUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 45824 0.78 0.15946
Target:  5'- cGCAGCCCGagugacgccaccCUCGAagcACUCG-CCGACGCc -3'
miRNA:   3'- -CGUCGGGC------------GAGUU---UGAGCuGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 34311 0.77 0.188025
Target:  5'- uGCAGCCCggcaagcuGCUCGGGCgUCGACC-ACACc -3'
miRNA:   3'- -CGUCGGG--------CGAGUUUG-AGCUGGcUGUG- -5'
26277 3' -54.9 NC_005345.2 + 5772 0.76 0.198506
Target:  5'- gGCGGUCCGCaggUCGGcguacGCgUCGACCGGCACc -3'
miRNA:   3'- -CGUCGGGCG---AGUU-----UG-AGCUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 42695 0.76 0.209492
Target:  5'- gGCGGCCCGCUCGAuguACguccgCGAgUGugACg -3'
miRNA:   3'- -CGUCGGGCGAGUU---UGa----GCUgGCugUG- -5'
26277 3' -54.9 NC_005345.2 + 19537 0.75 0.219239
Target:  5'- gGCAGCCCcaucgaGgaCAGgaccguguucagcuGCUCGACCGACACc -3'
miRNA:   3'- -CGUCGGG------CgaGUU--------------UGAGCUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 32083 0.75 0.239264
Target:  5'- aGCgAGuCCCGCgaccaGGACUCGACCGACu- -3'
miRNA:   3'- -CG-UC-GGGCGag---UUUGAGCUGGCUGug -5'
26277 3' -54.9 NC_005345.2 + 33668 0.75 0.239264
Target:  5'- uGCGGCgCaGCUCGGGCUCGACcCGAaGCa -3'
miRNA:   3'- -CGUCGgG-CGAGUUUGAGCUG-GCUgUG- -5'
26277 3' -54.9 NC_005345.2 + 24937 0.75 0.245628
Target:  5'- aGCAGCCgcCGCgaUCGAACUCGGCCccGACGg -3'
miRNA:   3'- -CGUCGG--GCG--AGUUUGAGCUGG--CUGUg -5'
26277 3' -54.9 NC_005345.2 + 45699 0.75 0.252131
Target:  5'- aCAGCCCGCgCGAGCUCGggGCCcGCAUc -3'
miRNA:   3'- cGUCGGGCGaGUUUGAGC--UGGcUGUG- -5'
26277 3' -54.9 NC_005345.2 + 44794 0.74 0.258775
Target:  5'- aGCGGCCCGCccgccCGAggcaggaccccgGCUCGGCCGAUg- -3'
miRNA:   3'- -CGUCGGGCGa----GUU------------UGAGCUGGCUGug -5'
26277 3' -54.9 NC_005345.2 + 43972 0.74 0.258775
Target:  5'- uGCAGCCCggcgGCUCGcccGACUCGucgGCCGcCGCg -3'
miRNA:   3'- -CGUCGGG----CGAGU---UUGAGC---UGGCuGUG- -5'
26277 3' -54.9 NC_005345.2 + 34394 0.74 0.272491
Target:  5'- -gAGCCCGgUCGAGCaCGucACCGACACc -3'
miRNA:   3'- cgUCGGGCgAGUUUGaGC--UGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 7056 0.74 0.272491
Target:  5'- gGCGGCCCgGC-CGGACUacgCGGCCGAgGCc -3'
miRNA:   3'- -CGUCGGG-CGaGUUUGA---GCUGGCUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.