miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26277 3' -54.9 NC_005345.2 + 10737 0.8 0.110616
Target:  5'- -uGGCCgCGCUCGAugUCGucGCCGACGCc -3'
miRNA:   3'- cgUCGG-GCGAGUUugAGC--UGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 11190 0.71 0.384855
Target:  5'- cGCAGCCUGgUCGAcGC-CGGCCuguGGCACg -3'
miRNA:   3'- -CGUCGGGCgAGUU-UGaGCUGG---CUGUG- -5'
26277 3' -54.9 NC_005345.2 + 45989 0.71 0.384855
Target:  5'- gGCAcCCCGa-CGAGCUCG-CCGACGCc -3'
miRNA:   3'- -CGUcGGGCgaGUUUGAGCuGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 42272 0.66 0.721778
Target:  5'- cCAuUCCGC-CGuccacCUCGACCGGCGCg -3'
miRNA:   3'- cGUcGGGCGaGUuu---GAGCUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 24937 0.75 0.245628
Target:  5'- aGCAGCCgcCGCgaUCGAACUCGGCCccGACGg -3'
miRNA:   3'- -CGUCGG--GCG--AGUUUGAGCUGG--CUGUg -5'
26277 3' -54.9 NC_005345.2 + 45699 0.75 0.252131
Target:  5'- aCAGCCCGCgCGAGCUCGggGCCcGCAUc -3'
miRNA:   3'- cGUCGGGCGaGUUUGAGC--UGGcUGUG- -5'
26277 3' -54.9 NC_005345.2 + 44794 0.74 0.258775
Target:  5'- aGCGGCCCGCccgccCGAggcaggaccccgGCUCGGCCGAUg- -3'
miRNA:   3'- -CGUCGGGCGa----GUU------------UGAGCUGGCUGug -5'
26277 3' -54.9 NC_005345.2 + 7056 0.74 0.272491
Target:  5'- gGCGGCCCgGC-CGGACUacgCGGCCGAgGCc -3'
miRNA:   3'- -CGUCGGG-CGaGUUUGA---GCUGGCUgUG- -5'
26277 3' -54.9 NC_005345.2 + 10820 0.72 0.341432
Target:  5'- uGguGCCUGCggCAGACaCGAgCCGGCGCc -3'
miRNA:   3'- -CguCGGGCGa-GUUUGaGCU-GGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 24186 0.72 0.375883
Target:  5'- gGCGGUUCGCUgucgaccgacuaCGGGCUCGACguccuCGACACg -3'
miRNA:   3'- -CGUCGGGCGA------------GUUUGAGCUG-----GCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 30372 0.72 0.349827
Target:  5'- gGCAGCCCGCggcgggcgcaggUCGAGgcguacCUCGA-CGACGCg -3'
miRNA:   3'- -CGUCGGGCG------------AGUUU------GAGCUgGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 16689 0.73 0.325082
Target:  5'- uCAGCCgGCUCGccGACaucaCGGCCGACAg -3'
miRNA:   3'- cGUCGGgCGAGU--UUGa---GCUGGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 45824 0.78 0.15946
Target:  5'- cGCAGCCCGagugacgccaccCUCGAagcACUCG-CCGACGCc -3'
miRNA:   3'- -CGUCGGGC------------GAGUU---UGAGCuGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 31692 0.72 0.357507
Target:  5'- cGCAGCCCGUugggcguUCAcGCUCGACau-CACc -3'
miRNA:   3'- -CGUCGGGCG-------AGUuUGAGCUGgcuGUG- -5'
26277 3' -54.9 NC_005345.2 + 32083 0.75 0.239264
Target:  5'- aGCgAGuCCCGCgaccaGGACUCGACCGACu- -3'
miRNA:   3'- -CG-UC-GGGCGag---UUUGAGCUGGCUGug -5'
26277 3' -54.9 NC_005345.2 + 29744 0.73 0.29415
Target:  5'- cGCAG-CCGaC-CGAGCUCGGCgCGACGCu -3'
miRNA:   3'- -CGUCgGGC-GaGUUUGAGCUG-GCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 12036 0.72 0.367054
Target:  5'- cGUGGCCCcuGC-CGAGCUggaGACCGGCGCc -3'
miRNA:   3'- -CGUCGGG--CGaGUUUGAg--CUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 14445 0.71 0.384855
Target:  5'- cGCucuGCUCGCUCGccGACUCGcUCGGCAUc -3'
miRNA:   3'- -CGu--CGGGCGAGU--UUGAGCuGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 33668 0.75 0.239264
Target:  5'- uGCGGCgCaGCUCGGGCUCGACcCGAaGCa -3'
miRNA:   3'- -CGUCGgG-CGAGUUUGAGCUG-GCUgUG- -5'
26277 3' -54.9 NC_005345.2 + 43972 0.74 0.258775
Target:  5'- uGCAGCCCggcgGCUCGcccGACUCGucgGCCGcCGCg -3'
miRNA:   3'- -CGUCGGG----CGAGU---UUGAGC---UGGCuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.