miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26277 3' -54.9 NC_005345.2 + 332 0.7 0.46149
Target:  5'- gGCGGCuCCGCUCugaccgaaucaGAGCggugggCGACCGAUg- -3'
miRNA:   3'- -CGUCG-GGCGAG-----------UUUGa-----GCUGGCUGug -5'
26277 3' -54.9 NC_005345.2 + 571 0.71 0.403219
Target:  5'- --cGCCCGCcgCGAGCUC-AUCGGCGCc -3'
miRNA:   3'- cguCGGGCGa-GUUUGAGcUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 801 0.7 0.450469
Target:  5'- -gGGCCCGCUUAcaccuGCUCGcccggggGCCGuCACa -3'
miRNA:   3'- cgUCGGGCGAGUu----UGAGC-------UGGCuGUG- -5'
26277 3' -54.9 NC_005345.2 + 1123 0.66 0.710966
Target:  5'- cGCGGCCCaGUUCGAccGCUucCGGuuGGCGg -3'
miRNA:   3'- -CGUCGGG-CGAGUU--UGA--GCUggCUGUg -5'
26277 3' -54.9 NC_005345.2 + 1786 0.7 0.441561
Target:  5'- gGCAGgCCGCUCG-AC-CGACCG-UACc -3'
miRNA:   3'- -CGUCgGGCGAGUuUGaGCUGGCuGUG- -5'
26277 3' -54.9 NC_005345.2 + 2147 0.67 0.633709
Target:  5'- uGCuGCCuCGCUugcCGAGCUuccacgcguUGACCGugGCg -3'
miRNA:   3'- -CGuCGG-GCGA---GUUUGA---------GCUGGCugUG- -5'
26277 3' -54.9 NC_005345.2 + 2559 0.69 0.513261
Target:  5'- gGCGaguGCCCGgUCGAcguGCUCGggGCCGAgGCu -3'
miRNA:   3'- -CGU---CGGGCgAGUU---UGAGC--UGGCUgUG- -5'
26277 3' -54.9 NC_005345.2 + 2820 0.67 0.61146
Target:  5'- --cGCCUGCUCcAGCgccgcgaGGCCGACAg -3'
miRNA:   3'- cguCGGGCGAGuUUGag-----CUGGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 3398 0.66 0.678102
Target:  5'- gGCGGCgaGUUCGGGCUgagagaggCGGCgGGCGCg -3'
miRNA:   3'- -CGUCGggCGAGUUUGA--------GCUGgCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 3591 0.71 0.400429
Target:  5'- cCGGCCCGCccCGAcCUCGGCCGcugucgcccugcucGCGCa -3'
miRNA:   3'- cGUCGGGCGa-GUUuGAGCUGGC--------------UGUG- -5'
26277 3' -54.9 NC_005345.2 + 3950 0.67 0.62258
Target:  5'- cGCGGCCgGCagccuCUCGGgCGGCAUa -3'
miRNA:   3'- -CGUCGGgCGaguuuGAGCUgGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 4087 0.66 0.721778
Target:  5'- -gAGCCgaCGgUCGAGCaCGACgGGCACa -3'
miRNA:   3'- cgUCGG--GCgAGUUUGaGCUGgCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 4388 0.67 0.667043
Target:  5'- aCGGCgCCGCaUGAGCgCGAUCGACAa -3'
miRNA:   3'- cGUCG-GGCGaGUUUGaGCUGGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 4650 0.69 0.523907
Target:  5'- cGUcGCCUGCUguGcCUCGGCCGuCGCc -3'
miRNA:   3'- -CGuCGGGCGAguUuGAGCUGGCuGUG- -5'
26277 3' -54.9 NC_005345.2 + 4751 0.68 0.589285
Target:  5'- -gGGCUCGaCUCGGAcCUCGAC-GGCACc -3'
miRNA:   3'- cgUCGGGC-GAGUUU-GAGCUGgCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 5218 0.7 0.471631
Target:  5'- gGCAGCUCGCggCcGGCcugaUCG-CCGACGCg -3'
miRNA:   3'- -CGUCGGGCGa-GuUUG----AGCuGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 5269 0.67 0.667043
Target:  5'- uGCAGCgggacgcgcuCCGCcgCGGAgUccCGGCCGACGCc -3'
miRNA:   3'- -CGUCG----------GGCGa-GUUUgA--GCUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 5598 0.68 0.600359
Target:  5'- cGCucguGCCguggggCGC-CGGGCUCGugGCCGACGCg -3'
miRNA:   3'- -CGu---CGG------GCGaGUUUGAGC--UGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 5772 0.76 0.198506
Target:  5'- gGCGGUCCGCaggUCGGcguacGCgUCGACCGGCACc -3'
miRNA:   3'- -CGUCGGGCG---AGUU-----UG-AGCUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 5829 0.68 0.600359
Target:  5'- aGCAgcucGCCCGCUgGuuC-CGGCUGugGCg -3'
miRNA:   3'- -CGU----CGGGCGAgUuuGaGCUGGCugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.