miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26278 3' -57.1 NC_005345.2 + 45365 0.66 0.662598
Target:  5'- gGACCgugcggcgCGGGUccgCGuucACCUCGGCCguccagCGg -3'
miRNA:   3'- gCUGGa-------GCCCAa--GC---UGGAGCUGGa-----GC- -5'
26278 3' -57.1 NC_005345.2 + 24198 0.66 0.662598
Target:  5'- uCGACCgacuaCGGGcUCGAcguCCUCGACa-CGg -3'
miRNA:   3'- -GCUGGa----GCCCaAGCU---GGAGCUGgaGC- -5'
26278 3' -57.1 NC_005345.2 + 4824 0.66 0.651878
Target:  5'- gCGAUUUCGGGUaCG-CCUCGAUgggCGa -3'
miRNA:   3'- -GCUGGAGCCCAaGCuGGAGCUGga-GC- -5'
26278 3' -57.1 NC_005345.2 + 21022 0.66 0.641141
Target:  5'- cCGGCC-CGGGUgCGuuCCUCGGCacgCGc -3'
miRNA:   3'- -GCUGGaGCCCAaGCu-GGAGCUGga-GC- -5'
26278 3' -57.1 NC_005345.2 + 8008 0.66 0.641141
Target:  5'- gCGGCCgc-GGUuucacgagcUCGACgggCUCGACCUCGc -3'
miRNA:   3'- -GCUGGagcCCA---------AGCUG---GAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 21194 0.66 0.630396
Target:  5'- -cGCCguUCGGGUUcacgcgcuccgcCGACCUCGACggcaccgcgCUCGg -3'
miRNA:   3'- gcUGG--AGCCCAA------------GCUGGAGCUG---------GAGC- -5'
26278 3' -57.1 NC_005345.2 + 35555 0.66 0.630396
Target:  5'- gGGCCgccuUCGGGcUCGcCCgggacgCGAUCUCGa -3'
miRNA:   3'- gCUGG----AGCCCaAGCuGGa-----GCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 48752 0.66 0.630396
Target:  5'- uGGCCgCGGGUgcaCGACCUucgccaCGugUUCGc -3'
miRNA:   3'- gCUGGaGCCCAa--GCUGGA------GCugGAGC- -5'
26278 3' -57.1 NC_005345.2 + 42085 0.66 0.629321
Target:  5'- gGGCCUCGGccgcguaGUcCGGCCgggCcGCCUCGa -3'
miRNA:   3'- gCUGGAGCC-------CAaGCUGGa--GcUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 41275 0.66 0.608919
Target:  5'- gGACCggCGGGUgggUGugCUgGggccGCCUCGg -3'
miRNA:   3'- gCUGGa-GCCCAa--GCugGAgC----UGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 21154 0.66 0.605702
Target:  5'- uCGugCUugCGGGacagcgccuuguacUUCGcgGCCUCGGCCUUGu -3'
miRNA:   3'- -GCugGA--GCCC--------------AAGC--UGGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 44689 0.66 0.605702
Target:  5'- aCGGCCgcCGGGcccccgccggagccUccacaCGACCUCGAUCUCGc -3'
miRNA:   3'- -GCUGGa-GCCC--------------Aa----GCUGGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 29427 0.67 0.587518
Target:  5'- gCGGgCguugCGGGcgUCGuCCUCGGCgUCGa -3'
miRNA:   3'- -GCUgGa---GCCCa-AGCuGGAGCUGgAGC- -5'
26278 3' -57.1 NC_005345.2 + 9922 0.67 0.587518
Target:  5'- uGACCg-GGGcagUCGGCgUCGGCC-CGa -3'
miRNA:   3'- gCUGGagCCCa--AGCUGgAGCUGGaGC- -5'
26278 3' -57.1 NC_005345.2 + 18345 0.67 0.576868
Target:  5'- uCGGCC-CGGG-UCGAggUCGACCagUCGg -3'
miRNA:   3'- -GCUGGaGCCCaAGCUggAGCUGG--AGC- -5'
26278 3' -57.1 NC_005345.2 + 604 0.67 0.552548
Target:  5'- uCGGCCgccacCGGGUgaccauggugcggaUCGcguCCUCGGCCUgCGg -3'
miRNA:   3'- -GCUGGa----GCCCA--------------AGCu--GGAGCUGGA-GC- -5'
26278 3' -57.1 NC_005345.2 + 28150 0.67 0.545205
Target:  5'- gCGAaagccCCUCGGGagCgGugCUCGACCUg- -3'
miRNA:   3'- -GCU-----GGAGCCCaaG-CugGAGCUGGAgc -5'
26278 3' -57.1 NC_005345.2 + 18400 0.68 0.534771
Target:  5'- uCGugCcCGGcGUcUCGACCUCGACgaCGu -3'
miRNA:   3'- -GCugGaGCC-CA-AGCUGGAGCUGgaGC- -5'
26278 3' -57.1 NC_005345.2 + 16796 0.68 0.514124
Target:  5'- uGACCUCGccaacCGA-CUCGACCUCGc -3'
miRNA:   3'- gCUGGAGCccaa-GCUgGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 32998 0.68 0.514124
Target:  5'- gCGGCCgggguggCGGGggcgUCGACgaUCGGgCUCGg -3'
miRNA:   3'- -GCUGGa------GCCCa---AGCUGg-AGCUgGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.