miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26280 3' -60.1 NC_005345.2 + 41559 0.66 0.443606
Target:  5'- -cGUCGugCGCGcGCUCGC-CgUGCUCg -3'
miRNA:   3'- gaCAGCuaGCGC-CGGGCGuGgACGAG- -5'
26280 3' -60.1 NC_005345.2 + 25248 0.66 0.443606
Target:  5'- -cGUCGG-CGCucGUgCgGCACCUGCUCa -3'
miRNA:   3'- gaCAGCUaGCGc-CGgG-CGUGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 37344 0.66 0.437886
Target:  5'- uUGUCGAacgcCGCGGCgUGCccgagcagcuuugcgGCCUcGCUCu -3'
miRNA:   3'- gACAGCUa---GCGCCGgGCG---------------UGGA-CGAG- -5'
26280 3' -60.1 NC_005345.2 + 44727 0.66 0.434096
Target:  5'- -gGUCGA--GCaacuCCCGCGCCUGCUUc -3'
miRNA:   3'- gaCAGCUagCGcc--GGGCGUGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 17633 0.66 0.434096
Target:  5'- -cGUCGAgaCGCGGCCgGUcggucacgACCgUGUUCg -3'
miRNA:   3'- gaCAGCUa-GCGCCGGgCG--------UGG-ACGAG- -5'
26280 3' -60.1 NC_005345.2 + 19216 0.66 0.434096
Target:  5'- -cGUCGAgC-CGGuCCuCGC-CCUGCUCu -3'
miRNA:   3'- gaCAGCUaGcGCC-GG-GCGuGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 41390 0.66 0.433152
Target:  5'- gUGUCGAUCacgugcaGCGGCgugccgucgagCCGguCCUGCa- -3'
miRNA:   3'- gACAGCUAG-------CGCCG-----------GGCguGGACGag -5'
26280 3' -60.1 NC_005345.2 + 16241 0.66 0.424706
Target:  5'- cCUGaUCGA-C-CGGCCCGCagcgcccccaGCCUGCg- -3'
miRNA:   3'- -GAC-AGCUaGcGCCGGGCG----------UGGACGag -5'
26280 3' -60.1 NC_005345.2 + 25657 0.66 0.424706
Target:  5'- uCUGUggccUGAUCGCGaacGCCUcgguGCACCggcUGCUCg -3'
miRNA:   3'- -GACA----GCUAGCGC---CGGG----CGUGG---ACGAG- -5'
26280 3' -60.1 NC_005345.2 + 45886 0.66 0.424706
Target:  5'- -cGUCGAUCaCGGUCUGCACg-GCg- -3'
miRNA:   3'- gaCAGCUAGcGCCGGGCGUGgaCGag -5'
26280 3' -60.1 NC_005345.2 + 43062 0.66 0.419131
Target:  5'- -cGUCGAUaccccgugcaagggGUGGCCCG-AgCUGCUCg -3'
miRNA:   3'- gaCAGCUAg-------------CGCCGGGCgUgGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 23424 0.66 0.415439
Target:  5'- -cGUCGAguucgUGUGGCCCgagcGCACCcGCg- -3'
miRNA:   3'- gaCAGCUa----GCGCCGGG----CGUGGaCGag -5'
26280 3' -60.1 NC_005345.2 + 10623 0.66 0.415439
Target:  5'- uCUGUCGGUaCG-GGCCCaCcCCgggGCUCg -3'
miRNA:   3'- -GACAGCUA-GCgCCGGGcGuGGa--CGAG- -5'
26280 3' -60.1 NC_005345.2 + 41892 0.66 0.415439
Target:  5'- gCUGUCGAgcaGCuGCUCGUcgucGCCUGgUCg -3'
miRNA:   3'- -GACAGCUag-CGcCGGGCG----UGGACgAG- -5'
26280 3' -60.1 NC_005345.2 + 22759 0.66 0.414519
Target:  5'- -gGUCGGUCGCGucgagcuGCCCGaacuGCgUGUUCu -3'
miRNA:   3'- gaCAGCUAGCGC-------CGGGCg---UGgACGAG- -5'
26280 3' -60.1 NC_005345.2 + 4899 0.66 0.412682
Target:  5'- -aGUCGAUgcucgccgagcugcUGCGGCagCCGCACgUGCg- -3'
miRNA:   3'- gaCAGCUA--------------GCGCCG--GGCGUGgACGag -5'
26280 3' -60.1 NC_005345.2 + 34783 0.66 0.411766
Target:  5'- -gGUCGccgagcugcgccggGUCGCGGUCCucgcgcacgccguGCGCCUGCc- -3'
miRNA:   3'- gaCAGC--------------UAGCGCCGGG-------------CGUGGACGag -5'
26280 3' -60.1 NC_005345.2 + 3308 0.66 0.406296
Target:  5'- ---aCGAUCGUcGCCCGCGCCgccGC-Cg -3'
miRNA:   3'- gacaGCUAGCGcCGGGCGUGGa--CGaG- -5'
26280 3' -60.1 NC_005345.2 + 32922 0.66 0.406296
Target:  5'- -gGUCGAUCaGgGGUagCGCAgCUGCUUg -3'
miRNA:   3'- gaCAGCUAG-CgCCGg-GCGUgGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 30251 0.66 0.406296
Target:  5'- ---aUGAUCGCGGCCgccgaGCagGCCggGCUCg -3'
miRNA:   3'- gacaGCUAGCGCCGGg----CG--UGGa-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.