miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26281 3' -64.4 NC_005345.2 + 13813 0.66 0.244009
Target:  5'- -aUCCAcGCGCCGGcCGCgccgaucgcccggaaGCUCGgCGCg -3'
miRNA:   3'- uaGGGU-CGCGGCC-GCGa--------------CGAGCgGUG- -5'
26281 3' -64.4 NC_005345.2 + 34424 0.66 0.243397
Target:  5'- cGUgCCGGCcUCGGUGUgcagcacgaGCUCGCCGCc -3'
miRNA:   3'- -UAgGGUCGcGGCCGCGa--------CGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 40692 0.66 0.243397
Target:  5'- gGUCCCAcGUgugGCCGGUGCcGUcCGuCCACa -3'
miRNA:   3'- -UAGGGU-CG---CGGCCGCGaCGaGC-GGUG- -5'
26281 3' -64.4 NC_005345.2 + 2749 0.66 0.243397
Target:  5'- gGUCgacaAGUGCCgccuucggacGGCgugGCUGCUCGCCGCc -3'
miRNA:   3'- -UAGgg--UCGCGG----------CCG---CGACGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 3917 0.66 0.237347
Target:  5'- cGUCguaCAG-GUCGGUGUcgucgaggUGCUCGCCGCg -3'
miRNA:   3'- -UAGg--GUCgCGGCCGCG--------ACGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 14380 0.66 0.236749
Target:  5'- -gCUCGGCGaCCGGCcggugccgauccgGCUGCacgUCGCCGa -3'
miRNA:   3'- uaGGGUCGC-GGCCG-------------CGACG---AGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 9754 0.66 0.236749
Target:  5'- cUCCCGggcacggcgauuGCGCCgccgaGGCGUagcugcgacagcgUGUUCGCCGCu -3'
miRNA:   3'- uAGGGU------------CGCGG-----CCGCG-------------ACGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 6981 0.66 0.236749
Target:  5'- cUUCCAGCuGCUGGCcgggcgccgacagGCaGCgUCGCCACc -3'
miRNA:   3'- uAGGGUCG-CGGCCG-------------CGaCG-AGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 2030 0.66 0.231423
Target:  5'- cGUCCUcgucgAGCGggcCCGGCGCggcccgGCggGCCGCg -3'
miRNA:   3'- -UAGGG-----UCGC---GGCCGCGa-----CGagCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 905 0.66 0.231423
Target:  5'- -gUCCGGaugcuuCGCCGGCGC--CUCGCCAa -3'
miRNA:   3'- uaGGGUC------GCGGCCGCGacGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 3025 0.66 0.231423
Target:  5'- -gCCgGGCGgCGGCaGCaUGCUCGCUu- -3'
miRNA:   3'- uaGGgUCGCgGCCG-CG-ACGAGCGGug -5'
26281 3' -64.4 NC_005345.2 + 33769 0.66 0.231423
Target:  5'- -aCCCGG-GCCaaguacccccGCGCUGCcgUCGCCGCc -3'
miRNA:   3'- uaGGGUCgCGGc---------CGCGACG--AGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 20596 0.66 0.21995
Target:  5'- -aUCCGGgGCCGGCGggcGCUCGCa-- -3'
miRNA:   3'- uaGGGUCgCGGCCGCga-CGAGCGgug -5'
26281 3' -64.4 NC_005345.2 + 12842 0.66 0.214947
Target:  5'- cAUCaCCGGCGaggaCCGGUGacgucgugggggugGCUCGCCGCc -3'
miRNA:   3'- -UAG-GGUCGC----GGCCGCga------------CGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 21588 0.66 0.214397
Target:  5'- -gCCCGGcCGCCGGgGUccgacgagccgaUGCcgcgggugaUCGCCGCg -3'
miRNA:   3'- uaGGGUC-GCGGCCgCG------------ACG---------AGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 35872 0.66 0.214397
Target:  5'- --aCCGGCgagcuGCCGGUGCagcgGUUCGCCGa -3'
miRNA:   3'- uagGGUCG-----CGGCCGCGa---CGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 37739 0.66 0.212755
Target:  5'- --gCCGGCugGUCGGCgucgucgaggucgaGCUGCUCGcCCGCa -3'
miRNA:   3'- uagGGUCG--CGGCCG--------------CGACGAGC-GGUG- -5'
26281 3' -64.4 NC_005345.2 + 22171 0.67 0.208965
Target:  5'- ---gCAGCGCCGGCGCUgggaucggGUUCGUCc- -3'
miRNA:   3'- uaggGUCGCGGCCGCGA--------CGAGCGGug -5'
26281 3' -64.4 NC_005345.2 + 35329 0.67 0.208965
Target:  5'- uUCCgGGCGaUCGGCGCgGC-CGgCGCg -3'
miRNA:   3'- uAGGgUCGC-GGCCGCGaCGaGCgGUG- -5'
26281 3' -64.4 NC_005345.2 + 27026 0.67 0.203653
Target:  5'- --aCCA-CGUCGacgagucuGUGCUGCUCGCCACc -3'
miRNA:   3'- uagGGUcGCGGC--------CGCGACGAGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.