miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26283 3' -61.8 NC_005345.2 + 48383 0.69 0.261935
Target:  5'- aCGGCGCUgCGCUgggagaaCGUCGaccUgGACGCCCa -3'
miRNA:   3'- -GCCGCGG-GCGA-------GCAGC---AgCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 48056 0.69 0.249991
Target:  5'- cCGGCGCgcaCCGCUCGUCGccgUCGAggggACUCUc -3'
miRNA:   3'- -GCCGCG---GGCGAGCAGC---AGCUg---UGGGA- -5'
26283 3' -61.8 NC_005345.2 + 47607 0.73 0.121225
Target:  5'- aCGGUGCCCgguugGCUCGacgCGccCGACACCCa -3'
miRNA:   3'- -GCCGCGGG-----CGAGCa--GCa-GCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 47121 0.72 0.14602
Target:  5'- cCGG-GCCCGCUCGaCGagGACGCCg- -3'
miRNA:   3'- -GCCgCGGGCGAGCaGCagCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 45816 0.7 0.20147
Target:  5'- gCGGCGCCCGCagcccgagugaCGccacccucgaagcacUCGcCGACGCCCUc -3'
miRNA:   3'- -GCCGCGGGCGa----------GC---------------AGCaGCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 45714 0.66 0.373515
Target:  5'- uCGGgGCCCGCaUCGcCGccCGccgccGCGCCCg -3'
miRNA:   3'- -GCCgCGGGCG-AGCaGCa-GC-----UGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 45083 0.67 0.310682
Target:  5'- uCGGCGCaccgaggcauaCCGUgucggCGcUCGUCGGCGCCg- -3'
miRNA:   3'- -GCCGCG-----------GGCGa----GC-AGCAGCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 44986 0.79 0.050462
Target:  5'- uGaGCGCCUGC-CG-CGUCGACACCCg -3'
miRNA:   3'- gC-CGCGGGCGaGCaGCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 43993 0.69 0.262576
Target:  5'- gCGGCGacgagUCGCUCGUgcacggUGUCGGCGCUCa -3'
miRNA:   3'- -GCCGCg----GGCGAGCA------GCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 43981 0.69 0.237908
Target:  5'- gCGGCucGCCCGaCUCGUCGgccgccgCGGCGCguuCCUc -3'
miRNA:   3'- -GCCG--CGGGC-GAGCAGCa------GCUGUG---GGA- -5'
26283 3' -61.8 NC_005345.2 + 43539 0.66 0.365206
Target:  5'- gCGGauCGCCgaGCUCGUCGcCGACaaGCUCg -3'
miRNA:   3'- -GCC--GCGGg-CGAGCAGCaGCUG--UGGGa -5'
26283 3' -61.8 NC_005345.2 + 43229 0.71 0.189471
Target:  5'- aCGGCGaCCCGCU----GUCGugGCCCg -3'
miRNA:   3'- -GCCGC-GGGCGAgcagCAGCugUGGGa -5'
26283 3' -61.8 NC_005345.2 + 43057 0.69 0.237908
Target:  5'- gCGGUGCCgGCUCGgucgugUCGUCGggcaGCAgCCa -3'
miRNA:   3'- -GCCGCGGgCGAGC------AGCAGC----UGUgGGa -5'
26283 3' -61.8 NC_005345.2 + 43037 0.72 0.162191
Target:  5'- uCGGCGgCCGCaccuacgCGcggcUCGUCGAUACCCc -3'
miRNA:   3'- -GCCGCgGGCGa------GC----AGCAGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 42806 0.71 0.179956
Target:  5'- cCGGCG-CCGCUCGUgcCGUacgaGACGCUCg -3'
miRNA:   3'- -GCCGCgGGCGAGCA--GCAg---CUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 42066 0.67 0.318078
Target:  5'- cCGGCuGCUCgGCgacagCGUCGagcuacgCGGCACCCUc -3'
miRNA:   3'- -GCCG-CGGG-CGa----GCAGCa------GCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 41911 0.66 0.390514
Target:  5'- uCGuCGCCUGgUCGUCGccgaCGACACCg- -3'
miRNA:   3'- -GCcGCGGGCgAGCAGCa---GCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 41891 0.7 0.215209
Target:  5'- gCGGCGa-CGCUUGUCGguUCGGcCGCCCg -3'
miRNA:   3'- -GCCGCggGCGAGCAGC--AGCU-GUGGGa -5'
26283 3' -61.8 NC_005345.2 + 41713 0.7 0.220704
Target:  5'- cCGGU-CCUGCUCGaCGUCaACGCCCg -3'
miRNA:   3'- -GCCGcGGGCGAGCaGCAGcUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 40709 0.81 0.036079
Target:  5'- -cGCGCCCguGCUCGUCGUCGACagcgACCCg -3'
miRNA:   3'- gcCGCGGG--CGAGCAGCAGCUG----UGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.