miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26285 5' -59.9 NC_005345.2 + 44049 0.66 0.439933
Target:  5'- gGCAuCGGGAU--GCCgCG-CUCGCgGCg -3'
miRNA:   3'- aCGU-GCCCUGucUGG-GCuGAGCGgCG- -5'
26285 5' -59.9 NC_005345.2 + 6657 0.66 0.445613
Target:  5'- gGCACGGGcgaacgugGCGaucuccucgacgacGGCCuCGGCgucgauaUCGCCGCg -3'
miRNA:   3'- aCGUGCCC--------UGU--------------CUGG-GCUG-------AGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 20342 0.66 0.439933
Target:  5'- cGCGCGGuGCGGACCU----UGCCGUg -3'
miRNA:   3'- aCGUGCCcUGUCUGGGcugaGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 48493 0.66 0.439933
Target:  5'- cGC-CGGGuuccgcACGGuCCCG-CUCacGCCGCa -3'
miRNA:   3'- aCGuGCCC------UGUCuGGGCuGAG--CGGCG- -5'
26285 5' -59.9 NC_005345.2 + 43960 0.66 0.439933
Target:  5'- gUGC-CGGGGCGGACCUcgGGCgaGCCu- -3'
miRNA:   3'- -ACGuGCCCUGUCUGGG--CUGagCGGcg -5'
26285 5' -59.9 NC_005345.2 + 18150 0.66 0.439933
Target:  5'- gGCACGuaGGcCGGACCgGGCggGCCGa -3'
miRNA:   3'- aCGUGC--CCuGUCUGGgCUGagCGGCg -5'
26285 5' -59.9 NC_005345.2 + 15558 0.66 0.439933
Target:  5'- -aCACGGcGGCAccggcGACCgCGACa-GCCGCg -3'
miRNA:   3'- acGUGCC-CUGU-----CUGG-GCUGagCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 10160 0.66 0.439933
Target:  5'- gGgAUGGGcGCAGACgCGACgguggucgCGCCGa -3'
miRNA:   3'- aCgUGCCC-UGUCUGgGCUGa-------GCGGCg -5'
26285 5' -59.9 NC_005345.2 + 3758 0.66 0.439933
Target:  5'- cGCGCGuGGGCuuGGcacacCCCcACUCGCCGg -3'
miRNA:   3'- aCGUGC-CCUGu-CU-----GGGcUGAGCGGCg -5'
26285 5' -59.9 NC_005345.2 + 22007 0.66 0.449422
Target:  5'- aGCGCcucGGGCAG-CUCGACgccggccggUGCCGCc -3'
miRNA:   3'- aCGUGc--CCUGUCuGGGCUGa--------GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 30590 0.66 0.449422
Target:  5'- cGCugGGcGCGcACCCGGCgagCGCCccgaGCa -3'
miRNA:   3'- aCGugCCcUGUcUGGGCUGa--GCGG----CG- -5'
26285 5' -59.9 NC_005345.2 + 15614 0.66 0.459022
Target:  5'- aGCGuCGucaGCAuGCCgCGGCUCGCCGCc -3'
miRNA:   3'- aCGU-GCcc-UGUcUGG-GCUGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 1405 0.66 0.478544
Target:  5'- gUGaCGCGGGGCcagaGGAUCCc-CUCGUCGUc -3'
miRNA:   3'- -AC-GUGCCCUG----UCUGGGcuGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 31290 0.66 0.477558
Target:  5'- gUGCGCgccacgggGGGAUgucgccgGGGCCCGGCg-GCCGg -3'
miRNA:   3'- -ACGUG--------CCCUG-------UCUGGGCUGagCGGCg -5'
26285 5' -59.9 NC_005345.2 + 17554 0.66 0.468731
Target:  5'- -cCGCGGGccgcgccgaGCAgGGCCCGGCagaGCUGCa -3'
miRNA:   3'- acGUGCCC---------UGU-CUGGGCUGag-CGGCG- -5'
26285 5' -59.9 NC_005345.2 + 32834 0.66 0.468731
Target:  5'- cUGCGCGGGAguGAgCUCGGgaUGgUGCa -3'
miRNA:   3'- -ACGUGCCCUguCU-GGGCUgaGCgGCG- -5'
26285 5' -59.9 NC_005345.2 + 25074 0.66 0.468731
Target:  5'- gUGcCACGGccGGCcGA-UCGGCUCGCCGUa -3'
miRNA:   3'- -AC-GUGCC--CUGuCUgGGCUGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 21156 0.66 0.468731
Target:  5'- gUGCuuGCGGGACAGcGCCUuguACuUCGCgGCc -3'
miRNA:   3'- -ACG--UGCCCUGUC-UGGGc--UG-AGCGgCG- -5'
26285 5' -59.9 NC_005345.2 + 8418 0.66 0.468731
Target:  5'- aGUACGuaGGGCu-GCCCGGgUCGCUGUc -3'
miRNA:   3'- aCGUGC--CCUGucUGGGCUgAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 22294 0.66 0.459022
Target:  5'- cGCuguCGGGcACGuuGCCCGcGCUCGgCGCg -3'
miRNA:   3'- aCGu--GCCC-UGUc-UGGGC-UGAGCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.