miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26287 5' -54.5 NC_005345.2 + 9292 0.69 0.564875
Target:  5'- cGGUCaggauguccuGCCaGGUGCGGC-CGgccGAGCCc -3'
miRNA:   3'- -CCAG----------UGGcCCACGUCGaGCau-CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 27762 0.67 0.673822
Target:  5'- cGUCGCgcugcaggacgaaCGGGcGCAGCUCGguguACCa -3'
miRNA:   3'- cCAGUG-------------GCCCaCGUCGAGCaucuUGG- -5'
26287 5' -54.5 NC_005345.2 + 22319 0.67 0.663928
Target:  5'- cGGcgCGCCGGGUGCcGGCagcagugaugCGgcGAGCa -3'
miRNA:   3'- -CCa-GUGGCCCACG-UCGa---------GCauCUUGg -5'
26287 5' -54.5 NC_005345.2 + 14892 0.68 0.641866
Target:  5'- cGGUCAa-GGGU-CAGgUCG-AGGACCg -3'
miRNA:   3'- -CCAGUggCCCAcGUCgAGCaUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 9724 0.68 0.641866
Target:  5'- cGUCGCCGGGgucgaGCGGgUCGgccucGAugCu -3'
miRNA:   3'- cCAGUGGCCCa----CGUCgAGCau---CUugG- -5'
26287 5' -54.5 NC_005345.2 + 45566 0.68 0.607628
Target:  5'- aGGUCggggcggGCCGGuUGCGGC-CG-GGGGCCg -3'
miRNA:   3'- -CCAG-------UGGCCcACGUCGaGCaUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 5935 0.68 0.597714
Target:  5'- gGGUCGCCGuGGUcguucucaggGaCAGCggCGUGGGgaaACCa -3'
miRNA:   3'- -CCAGUGGC-CCA----------C-GUCGa-GCAUCU---UGG- -5'
26287 5' -54.5 NC_005345.2 + 18248 0.69 0.586726
Target:  5'- cGUCACCGGGuUGCAGaUC--AGcAGCCa -3'
miRNA:   3'- cCAGUGGCCC-ACGUCgAGcaUC-UUGG- -5'
26287 5' -54.5 NC_005345.2 + 37105 0.69 0.575777
Target:  5'- cGG-CGCCGGucucCAGCUCGgcaGGGGCCa -3'
miRNA:   3'- -CCaGUGGCCcac-GUCGAGCa--UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 40069 0.67 0.674919
Target:  5'- cGGUCGCCGGcGacgGCGGCccggauaaagUCGc-GGACCu -3'
miRNA:   3'- -CCAGUGGCC-Ca--CGUCG----------AGCauCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 31844 0.67 0.707604
Target:  5'- --gCGgCGGGUGCGGCgcaccugCGgcGAACg -3'
miRNA:   3'- ccaGUgGCCCACGUCGa------GCauCUUGg -5'
26287 5' -54.5 NC_005345.2 + 33033 0.67 0.707604
Target:  5'- cGGcCGCgGGGUGCgguccGGCUCGacguuGGGCUc -3'
miRNA:   3'- -CCaGUGgCCCACG-----UCGAGCau---CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 26102 0.66 0.760433
Target:  5'- aGGcgUACCGGGUGUucgcuAGCgUCGaggGGGAUCu -3'
miRNA:   3'- -CCa-GUGGCCCACG-----UCG-AGCa--UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 4269 0.66 0.760433
Target:  5'- --aCACCGGcGgugcggGCAGCUCGggcucGGGCUg -3'
miRNA:   3'- ccaGUGGCC-Ca-----CGUCGAGCau---CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 33316 0.66 0.750085
Target:  5'- --cCugCGcGGUGUAGCUCGg---GCCg -3'
miRNA:   3'- ccaGugGC-CCACGUCGAGCaucuUGG- -5'
26287 5' -54.5 NC_005345.2 + 27880 0.66 0.750085
Target:  5'- aGGUCccgGCCGGGUucgacguaCAGCUCGgcGAcGCg -3'
miRNA:   3'- -CCAG---UGGCCCAc-------GUCGAGCauCU-UGg -5'
26287 5' -54.5 NC_005345.2 + 31192 0.66 0.72904
Target:  5'- cGGgcgCGgCGGGUGCGGCggGUGcGcACCc -3'
miRNA:   3'- -CCa--GUgGCCCACGUCGagCAU-CuUGG- -5'
26287 5' -54.5 NC_005345.2 + 2799 0.66 0.72904
Target:  5'- cGG-CGCCGGcGUGC-GCUCG-AucGCCu -3'
miRNA:   3'- -CCaGUGGCC-CACGuCGAGCaUcuUGG- -5'
26287 5' -54.5 NC_005345.2 + 35249 0.66 0.72904
Target:  5'- cGUCGauGGGcgGCAGUUCGgugaugguccGGAGCCg -3'
miRNA:   3'- cCAGUggCCCa-CGUCGAGCa---------UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 6005 0.66 0.718365
Target:  5'- --gUugCGGGUGCAGUUcuccggccggcCGUuGGGCCa -3'
miRNA:   3'- ccaGugGCCCACGUCGA-----------GCAuCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.