miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26288 3' -59 NC_005345.2 + 28714 0.66 0.554266
Target:  5'- cGUCGGACGGaa-CCGagaCGCUcgUCGGGUu -3'
miRNA:   3'- cCAGCCUGCUgcgGGC---GUGA--AGCCCG- -5'
26288 3' -59 NC_005345.2 + 46025 0.66 0.523337
Target:  5'- cGGUCGGACGggGCgGCCCcucgGUAUgucCGGGg -3'
miRNA:   3'- -CCAGCCUGC--UG-CGGG----CGUGaa-GCCCg -5'
26288 3' -59 NC_005345.2 + 36003 0.66 0.523337
Target:  5'- --gCGGAcuCGGCGUCagcccccuugaCGCACggCGGGCg -3'
miRNA:   3'- ccaGCCU--GCUGCGG-----------GCGUGaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 35106 0.66 0.523337
Target:  5'- uGGUgCGGGCGugGCgggUGUugUUcauggCGGGCg -3'
miRNA:   3'- -CCA-GCCUGCugCGg--GCGugAA-----GCCCG- -5'
26288 3' -59 NC_005345.2 + 32093 0.66 0.523337
Target:  5'- gGGcUCGGGuuCGAC-CUCGgGC-UCGGGCa -3'
miRNA:   3'- -CC-AGCCU--GCUGcGGGCgUGaAGCCCG- -5'
26288 3' -59 NC_005345.2 + 12776 0.66 0.51216
Target:  5'- cGGccgCGGAgcGCGCCCGCguacgcgGCgaaagUCGGGUc -3'
miRNA:   3'- -CCa--GCCUgcUGCGGGCG-------UGa----AGCCCG- -5'
26288 3' -59 NC_005345.2 + 15841 0.66 0.503089
Target:  5'- --aUGGGCGcGgGCCCGCucGCggUGGGCg -3'
miRNA:   3'- ccaGCCUGC-UgCGGGCG--UGaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 5204 0.66 0.503089
Target:  5'- -aUCGGcACGGCcgGCCCgGCGCUacacgccgUCGGGg -3'
miRNA:   3'- ccAGCC-UGCUG--CGGG-CGUGA--------AGCCCg -5'
26288 3' -59 NC_005345.2 + 40120 0.66 0.503089
Target:  5'- cGGUCGccguccuucuGGCGGgucuugaucCGCaCCGUGCUgccgUCGGGCa -3'
miRNA:   3'- -CCAGC----------CUGCU---------GCG-GGCGUGA----AGCCCG- -5'
26288 3' -59 NC_005345.2 + 18767 0.66 0.533579
Target:  5'- aGGUaCGccucGACcuGCGCCCGCcgcggGCUgccgUCGGGCa -3'
miRNA:   3'- -CCA-GC----CUGc-UGCGGGCG-----UGA----AGCCCG- -5'
26288 3' -59 NC_005345.2 + 23249 0.66 0.533579
Target:  5'- gGGUCGuacuCGACGa-UGCACUcgcUCGGGUg -3'
miRNA:   3'- -CCAGCcu--GCUGCggGCGUGA---AGCCCG- -5'
26288 3' -59 NC_005345.2 + 28675 0.66 0.533579
Target:  5'- cGGUCGGGgccacaggcgaGGCGUUgGCuAC-UCGGGCg -3'
miRNA:   3'- -CCAGCCUg----------CUGCGGgCG-UGaAGCCCG- -5'
26288 3' -59 NC_005345.2 + 42745 0.66 0.554266
Target:  5'- cGGaUCGGAcCGGCaCCCGgCGgUUgcCGGGCu -3'
miRNA:   3'- -CC-AGCCU-GCUGcGGGC-GUgAA--GCCCG- -5'
26288 3' -59 NC_005345.2 + 22974 0.66 0.554266
Target:  5'- uGUC-GAgGACaCCCGCGaacUCGGGCu -3'
miRNA:   3'- cCAGcCUgCUGcGGGCGUga-AGCCCG- -5'
26288 3' -59 NC_005345.2 + 37488 0.66 0.554266
Target:  5'- --gCGGuACGACGuuCCCGC-CgggcgCGGGCu -3'
miRNA:   3'- ccaGCC-UGCUGC--GGGCGuGaa---GCCCG- -5'
26288 3' -59 NC_005345.2 + 26632 0.66 0.554266
Target:  5'- uGUCGGGCGcccggccggGCGaCCCGUg--UCGGGg -3'
miRNA:   3'- cCAGCCUGC---------UGC-GGGCGugaAGCCCg -5'
26288 3' -59 NC_005345.2 + 21873 0.66 0.553226
Target:  5'- aGGUCGGucucggugauCGAcagcagccgguucCGCCCcuCGCUcCGGGCg -3'
miRNA:   3'- -CCAGCCu---------GCU-------------GCGGGc-GUGAaGCCCG- -5'
26288 3' -59 NC_005345.2 + 17941 0.66 0.54389
Target:  5'- cGGUcCGGAacugucCGGCGUCCGCucggccgcCUgcCGGGCc -3'
miRNA:   3'- -CCA-GCCU------GCUGCGGGCGu-------GAa-GCCCG- -5'
26288 3' -59 NC_005345.2 + 17523 0.66 0.54389
Target:  5'- cGGcCGGGCGAggaccguguCGCCaUGCGauccgCGGGCc -3'
miRNA:   3'- -CCaGCCUGCU---------GCGG-GCGUgaa--GCCCG- -5'
26288 3' -59 NC_005345.2 + 46581 0.66 0.54389
Target:  5'- aGGUgGGucAUGuacACGCCuCGCGCUggaUCGGGg -3'
miRNA:   3'- -CCAgCC--UGC---UGCGG-GCGUGA---AGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.