miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26288 3' -59 NC_005345.2 + 24377 1.13 0.000255
Target:  5'- aGGUCGGACGACGCCCGCACUUCGGGCu -3'
miRNA:   3'- -CCAGCCUGCUGCGGGCGUGAAGCCCG- -5'
26288 3' -59 NC_005345.2 + 25712 0.76 0.119415
Target:  5'- cGGUcCGGACGGCGaaCCCGaCACc-CGGGCg -3'
miRNA:   3'- -CCA-GCCUGCUGC--GGGC-GUGaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 6613 0.76 0.119415
Target:  5'- uGUCGGACGAUGCUCGUGaugUCGGuGCc -3'
miRNA:   3'- cCAGCCUGCUGCGGGCGUga-AGCC-CG- -5'
26288 3' -59 NC_005345.2 + 19724 0.76 0.126052
Target:  5'- ---aGGACGACGCCCGCAacgcccgCGaGGCg -3'
miRNA:   3'- ccagCCUGCUGCGGGCGUgaa----GC-CCG- -5'
26288 3' -59 NC_005345.2 + 33886 0.76 0.133028
Target:  5'- uGGg-GGACGcCGCUCGCGCggcCGGGCa -3'
miRNA:   3'- -CCagCCUGCuGCGGGCGUGaa-GCCCG- -5'
26288 3' -59 NC_005345.2 + 14826 0.76 0.136648
Target:  5'- gGGUgUGGuCGACGCCCGagcaGCUUgcCGGGCu -3'
miRNA:   3'- -CCA-GCCuGCUGCGGGCg---UGAA--GCCCG- -5'
26288 3' -59 NC_005345.2 + 9089 0.75 0.144162
Target:  5'- cGUCGccGGCGAcCGCCCGCACgUCGcGGUg -3'
miRNA:   3'- cCAGC--CUGCU-GCGGGCGUGaAGC-CCG- -5'
26288 3' -59 NC_005345.2 + 22297 0.75 0.148058
Target:  5'- uGUCGGGCacguUGCCCGCGC-UCGGcGCg -3'
miRNA:   3'- cCAGCCUGcu--GCGGGCGUGaAGCC-CG- -5'
26288 3' -59 NC_005345.2 + 23654 0.75 0.148058
Target:  5'- aGG-CGGACGGCGCCgaccaggguCGCGgCcggUCGGGCg -3'
miRNA:   3'- -CCaGCCUGCUGCGG---------GCGU-Ga--AGCCCG- -5'
26288 3' -59 NC_005345.2 + 37454 0.74 0.164619
Target:  5'- uGGUCGGccguCGAucCGCCUGCAgcgCGGGCg -3'
miRNA:   3'- -CCAGCCu---GCU--GCGGGCGUgaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 30145 0.74 0.187648
Target:  5'- cGUCGaGGCGcCGCCC-CGC-UCGGGCc -3'
miRNA:   3'- cCAGC-CUGCuGCGGGcGUGaAGCCCG- -5'
26288 3' -59 NC_005345.2 + 16616 0.73 0.202791
Target:  5'- --aCGGGCGGCccggaCCCGCGCagaUCGGGCc -3'
miRNA:   3'- ccaGCCUGCUGc----GGGCGUGa--AGCCCG- -5'
26288 3' -59 NC_005345.2 + 4685 0.73 0.20807
Target:  5'- -cUCGGcuCGACGCCCGUGCggcgaacaGGGCg -3'
miRNA:   3'- ccAGCCu-GCUGCGGGCGUGaag-----CCCG- -5'
26288 3' -59 NC_005345.2 + 7624 0.73 0.213467
Target:  5'- aGGUCGccgaGACGCUCGCGCUccgcguUCGGGa -3'
miRNA:   3'- -CCAGCcug-CUGCGGGCGUGA------AGCCCg -5'
26288 3' -59 NC_005345.2 + 23605 0.72 0.224622
Target:  5'- -uUCGGcGCGACGCCgGCGgacCGGGCa -3'
miRNA:   3'- ccAGCC-UGCUGCGGgCGUgaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 41549 0.72 0.228642
Target:  5'- uGGUC-GACGACGUcgugcgcgcgcucgCCGUGCUcgCGGGCg -3'
miRNA:   3'- -CCAGcCUGCUGCG--------------GGCGUGAa-GCCCG- -5'
26288 3' -59 NC_005345.2 + 48594 0.72 0.247796
Target:  5'- cGG-CGGGCGAggacccaCGCCgGCugUUCggaGGGCa -3'
miRNA:   3'- -CCaGCCUGCU-------GCGGgCGugAAG---CCCG- -5'
26288 3' -59 NC_005345.2 + 42958 0.72 0.248416
Target:  5'- gGGcCGGGCGGCaCgCGCACgaacCGGGCc -3'
miRNA:   3'- -CCaGCCUGCUGcGgGCGUGaa--GCCCG- -5'
26288 3' -59 NC_005345.2 + 21180 0.72 0.248416
Target:  5'- cGUC-GACGGCGCaCCGCcgUUCGGGUu -3'
miRNA:   3'- cCAGcCUGCUGCG-GGCGugAAGCCCG- -5'
26288 3' -59 NC_005345.2 + 26282 0.71 0.261075
Target:  5'- aGGaCGaACGGCGCCCGCucgucgucgacACccUCGGGCa -3'
miRNA:   3'- -CCaGCcUGCUGCGGGCG-----------UGa-AGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.