miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26288 3' -59 NC_005345.2 + 25712 0.76 0.119415
Target:  5'- cGGUcCGGACGGCGaaCCCGaCACc-CGGGCg -3'
miRNA:   3'- -CCA-GCCUGCUGC--GGGC-GUGaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 1382 0.7 0.324572
Target:  5'- cGUCGG-CGGuucCGCucuCCGUACUucUCGGGCg -3'
miRNA:   3'- cCAGCCuGCU---GCG---GGCGUGA--AGCCCG- -5'
26288 3' -59 NC_005345.2 + 19014 0.7 0.340156
Target:  5'- --aCGGGUGGCGCgCCGC-CcUCGGGCc -3'
miRNA:   3'- ccaGCCUGCUGCG-GGCGuGaAGCCCG- -5'
26288 3' -59 NC_005345.2 + 28714 0.66 0.554266
Target:  5'- cGUCGGACGGaa-CCGagaCGCUcgUCGGGUu -3'
miRNA:   3'- cCAGCCUGCUgcgGGC---GUGA--AGCCCG- -5'
26288 3' -59 NC_005345.2 + 9089 0.75 0.144162
Target:  5'- cGUCGccGGCGAcCGCCCGCACgUCGcGGUg -3'
miRNA:   3'- cCAGC--CUGCU-GCGGGCGUGaAGC-CCG- -5'
26288 3' -59 NC_005345.2 + 23654 0.75 0.148058
Target:  5'- aGG-CGGACGGCGCCgaccaggguCGCGgCcggUCGGGCg -3'
miRNA:   3'- -CCaGCCUGCUGCGG---------GCGU-Ga--AGCCCG- -5'
26288 3' -59 NC_005345.2 + 7624 0.73 0.213467
Target:  5'- aGGUCGccgaGACGCUCGCGCUccgcguUCGGGa -3'
miRNA:   3'- -CCAGCcug-CUGCGGGCGUGA------AGCCCg -5'
26288 3' -59 NC_005345.2 + 23605 0.72 0.224622
Target:  5'- -uUCGGcGCGACGCCgGCGgacCGGGCa -3'
miRNA:   3'- ccAGCC-UGCUGCGGgCGUgaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 42958 0.72 0.248416
Target:  5'- gGGcCGGGCGGCaCgCGCACgaacCGGGCc -3'
miRNA:   3'- -CCaGCCUGCUGcGgGCGUGaa--GCCCG- -5'
26288 3' -59 NC_005345.2 + 18193 0.7 0.309526
Target:  5'- cGUCGG-CGAgGCgCGCGCcgagUgGGGCg -3'
miRNA:   3'- cCAGCCuGCUgCGgGCGUGa---AgCCCG- -5'
26288 3' -59 NC_005345.2 + 37855 0.71 0.294306
Target:  5'- cGGUCGGucGCGGCcggcgaggcucagGCCCGgACggUCGcGGCg -3'
miRNA:   3'- -CCAGCC--UGCUG-------------CGGGCgUGa-AGC-CCG- -5'
26288 3' -59 NC_005345.2 + 21180 0.72 0.248416
Target:  5'- cGUC-GACGGCGCaCCGCcgUUCGGGUu -3'
miRNA:   3'- cCAGcCUGCUGCG-GGCGugAAGCCCG- -5'
26288 3' -59 NC_005345.2 + 19724 0.76 0.126052
Target:  5'- ---aGGACGACGCCCGCAacgcccgCGaGGCg -3'
miRNA:   3'- ccagCCUGCUGCGGGCGUgaa----GC-CCG- -5'
26288 3' -59 NC_005345.2 + 40319 0.71 0.295017
Target:  5'- cGUCaucGACGACGCguucaCCGCGCcguggCGGGCg -3'
miRNA:   3'- cCAGc--CUGCUGCG-----GGCGUGaa---GCCCG- -5'
26288 3' -59 NC_005345.2 + 33886 0.76 0.133028
Target:  5'- uGGg-GGACGcCGCUCGCGCggcCGGGCa -3'
miRNA:   3'- -CCagCCUGCuGCGGGCGUGaa-GCCCG- -5'
26288 3' -59 NC_005345.2 + 48594 0.72 0.247796
Target:  5'- cGG-CGGGCGAggacccaCGCCgGCugUUCggaGGGCa -3'
miRNA:   3'- -CCaGCCUGCU-------GCGGgCGugAAG---CCCG- -5'
26288 3' -59 NC_005345.2 + 34410 0.7 0.309526
Target:  5'- aGGU-GGGCGGCGCCgCGgACcggaUGGGCg -3'
miRNA:   3'- -CCAgCCUGCUGCGG-GCgUGaa--GCCCG- -5'
26288 3' -59 NC_005345.2 + 36535 0.7 0.324572
Target:  5'- gGGU-GGGCGAacgcgGCCCcgagcucguGCGCUUCGGGg -3'
miRNA:   3'- -CCAgCCUGCUg----CGGG---------CGUGAAGCCCg -5'
26288 3' -59 NC_005345.2 + 14826 0.76 0.136648
Target:  5'- gGGUgUGGuCGACGCCCGagcaGCUUgcCGGGCu -3'
miRNA:   3'- -CCA-GCCuGCUGCGGGCg---UGAA--GCCCG- -5'
26288 3' -59 NC_005345.2 + 30145 0.74 0.187648
Target:  5'- cGUCGaGGCGcCGCCC-CGC-UCGGGCc -3'
miRNA:   3'- cCAGC-CUGCuGCGGGcGUGaAGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.