miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26288 3' -59 NC_005345.2 + 885 0.71 0.274256
Target:  5'- cGGUCGGGCGGCaucaguucGUCCGgauGCUUCGccGGCg -3'
miRNA:   3'- -CCAGCCUGCUG--------CGGGCg--UGAAGC--CCG- -5'
26288 3' -59 NC_005345.2 + 1207 0.66 0.503089
Target:  5'- cGGcccgCGGGCcACGCCgCGCGgUaCGGGUc -3'
miRNA:   3'- -CCa---GCCUGcUGCGG-GCGUgAaGCCCG- -5'
26288 3' -59 NC_005345.2 + 1382 0.7 0.324572
Target:  5'- cGUCGG-CGGuucCGCucuCCGUACUucUCGGGCg -3'
miRNA:   3'- cCAGCCuGCU---GCG---GGCGUGA--AGCCCG- -5'
26288 3' -59 NC_005345.2 + 1491 0.7 0.329966
Target:  5'- cGGcccgCGGugGACccgcugaucuGCCCGCAaaacgaucuugggugUCGGGCg -3'
miRNA:   3'- -CCa---GCCugCUG----------CGGGCGUga-------------AGCCCG- -5'
26288 3' -59 NC_005345.2 + 2036 0.66 0.54389
Target:  5'- cGUCGaGCGG-GCCCgGCGCggcccggCGGGCc -3'
miRNA:   3'- cCAGCcUGCUgCGGG-CGUGaa-----GCCCG- -5'
26288 3' -59 NC_005345.2 + 2766 0.66 0.523337
Target:  5'- -uUCGGACGGCGUggcugcucgccgCCGCcCUUCGuGaGCc -3'
miRNA:   3'- ccAGCCUGCUGCG------------GGCGuGAAGC-C-CG- -5'
26288 3' -59 NC_005345.2 + 3342 0.66 0.520279
Target:  5'- cGGUCGcGACGACGgacgacCUCGCGCagugguucuacgagcUGGGCg -3'
miRNA:   3'- -CCAGC-CUGCUGC------GGGCGUGaa-------------GCCCG- -5'
26288 3' -59 NC_005345.2 + 3435 0.69 0.381443
Target:  5'- cGG-CGGGCGGCGaugcgggcCCCGaGCUcgcgCGGGCu -3'
miRNA:   3'- -CCaGCCUGCUGC--------GGGCgUGAa---GCCCG- -5'
26288 3' -59 NC_005345.2 + 4276 0.67 0.444584
Target:  5'- cGGUgCGGGCa--GCUCGgGC-UCGGGCu -3'
miRNA:   3'- -CCA-GCCUGcugCGGGCgUGaAGCCCG- -5'
26288 3' -59 NC_005345.2 + 4685 0.73 0.20807
Target:  5'- -cUCGGcuCGACGCCCGUGCggcgaacaGGGCg -3'
miRNA:   3'- ccAGCCu-GCUGCGGGCGUGaag-----CCCG- -5'
26288 3' -59 NC_005345.2 + 5204 0.66 0.503089
Target:  5'- -aUCGGcACGGCcgGCCCgGCGCUacacgccgUCGGGg -3'
miRNA:   3'- ccAGCC-UGCUG--CGGG-CGUGA--------AGCCCg -5'
26288 3' -59 NC_005345.2 + 5298 0.66 0.533579
Target:  5'- --cCGGcCGACGCCC-CGuCgacCGGGCa -3'
miRNA:   3'- ccaGCCuGCUGCGGGcGU-Gaa-GCCCG- -5'
26288 3' -59 NC_005345.2 + 5412 0.66 0.533579
Target:  5'- cGGUCGGcCGAgCGUCuCGCcgaguuCUUCGGcgGCg -3'
miRNA:   3'- -CCAGCCuGCU-GCGG-GCGu-----GAAGCC--CG- -5'
26288 3' -59 NC_005345.2 + 6613 0.76 0.119415
Target:  5'- uGUCGGACGAUGCUCGUGaugUCGGuGCc -3'
miRNA:   3'- cCAGCCUGCUGCGGGCGUga-AGCC-CG- -5'
26288 3' -59 NC_005345.2 + 7100 0.69 0.381443
Target:  5'- cGGUCGaaacggcccgcGACguGugGCgCCGCGCgaacCGGGCg -3'
miRNA:   3'- -CCAGC-----------CUG--CugCG-GGCGUGaa--GCCCG- -5'
26288 3' -59 NC_005345.2 + 7348 0.67 0.493093
Target:  5'- --gCGG-UGugGCCCGCGgUggcgcagcCGGGCg -3'
miRNA:   3'- ccaGCCuGCugCGGGCGUgAa-------GCCCG- -5'
26288 3' -59 NC_005345.2 + 7624 0.73 0.213467
Target:  5'- aGGUCGccgaGACGCUCGCGCUccgcguUCGGGa -3'
miRNA:   3'- -CCAGCcug-CUGCGGGCGUGA------AGCCCg -5'
26288 3' -59 NC_005345.2 + 8027 0.7 0.324572
Target:  5'- aGUCGGA--GC-CCCGUACcgCGGGCg -3'
miRNA:   3'- cCAGCCUgcUGcGGGCGUGaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 8186 0.67 0.454076
Target:  5'- aGGUCGaucgcgaaaGACGcCGCCUGCACgagaUCGGcCg -3'
miRNA:   3'- -CCAGC---------CUGCuGCGGGCGUGa---AGCCcG- -5'
26288 3' -59 NC_005345.2 + 8284 0.66 0.503089
Target:  5'- cGGUCGaaGCGGcCGCCCuccuGCACgugaUCGcGGCg -3'
miRNA:   3'- -CCAGCc-UGCU-GCGGG----CGUGa---AGC-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.