miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26289 5' -52.5 NC_005345.2 + 8898 0.66 0.859159
Target:  5'- cGACGUcGcCGUCGAucgucucgauccGGAACuGCCCGaccGGCa -3'
miRNA:   3'- -CUGCA-CaGCAGUU------------UCUUG-UGGGC---CCG- -5'
26289 5' -52.5 NC_005345.2 + 44669 0.66 0.859159
Target:  5'- cACGgcUCGUCGAGccGGACACggccgCCGGGCc -3'
miRNA:   3'- cUGCacAGCAGUUU--CUUGUG-----GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 10227 0.66 0.859159
Target:  5'- cACGacccCGUCGAGGucaagcucGACACCgGGGCa -3'
miRNA:   3'- cUGCaca-GCAGUUUC--------UUGUGGgCCCG- -5'
26289 5' -52.5 NC_005345.2 + 40185 0.66 0.854061
Target:  5'- cGACGUGagcgacagGUCGAGcccGAGCACCCgcagcccgcccacggGGGCg -3'
miRNA:   3'- -CUGCACag------CAGUUU---CUUGUGGG---------------CCCG- -5'
26289 5' -52.5 NC_005345.2 + 31400 0.66 0.850613
Target:  5'- uGCGUGcCGUCcuGGu-CGCUCGGGg -3'
miRNA:   3'- cUGCACaGCAGuuUCuuGUGGGCCCg -5'
26289 5' -52.5 NC_005345.2 + 39679 0.66 0.850613
Target:  5'- cGGCGUGaUCuUCcugcAGuucGCGCCCGGGUg -3'
miRNA:   3'- -CUGCAC-AGcAGuu--UCu--UGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 33247 0.66 0.850613
Target:  5'- aGGCGa-UCGUCAcGGggUacagcucgguGCCCGGGUc -3'
miRNA:   3'- -CUGCacAGCAGUuUCuuG----------UGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 23689 0.66 0.850613
Target:  5'- cGGCGUcUCGUCGAGcauguCGCCCccucucGGGCa -3'
miRNA:   3'- -CUGCAcAGCAGUUUcuu--GUGGG------CCCG- -5'
26289 5' -52.5 NC_005345.2 + 29968 0.66 0.845371
Target:  5'- gGGCucGUCGUCGAGGGGCucgucggcguccucgGCCgGGGUc -3'
miRNA:   3'- -CUGcaCAGCAGUUUCUUG---------------UGGgCCCG- -5'
26289 5' -52.5 NC_005345.2 + 29887 0.66 0.841829
Target:  5'- gGACG-GUCGaCAGGu-GCACCCGGucGCg -3'
miRNA:   3'- -CUGCaCAGCaGUUUcuUGUGGGCC--CG- -5'
26289 5' -52.5 NC_005345.2 + 26360 0.66 0.841829
Target:  5'- -gUGUGggCGUCGgaggguGAGAACACgcaguUCGGGCa -3'
miRNA:   3'- cuGCACa-GCAGU------UUCUUGUG-----GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 17448 0.66 0.832816
Target:  5'- --gGUGaUGUCGAGcguGAACGCCCaacGGGCu -3'
miRNA:   3'- cugCACaGCAGUUU---CUUGUGGG---CCCG- -5'
26289 5' -52.5 NC_005345.2 + 6845 0.66 0.823583
Target:  5'- aACGaacGUUGUCGAGGGACGCCCa--- -3'
miRNA:   3'- cUGCa--CAGCAGUUUCUUGUGGGcccg -5'
26289 5' -52.5 NC_005345.2 + 392 0.67 0.81414
Target:  5'- cACGUGg---CGAAGGucguGCACCCGcGGCc -3'
miRNA:   3'- cUGCACagcaGUUUCU----UGUGGGC-CCG- -5'
26289 5' -52.5 NC_005345.2 + 9308 0.67 0.81414
Target:  5'- cGGCGUugaguUCGUCG----GCgACCCGGGCg -3'
miRNA:   3'- -CUGCAc----AGCAGUuucuUG-UGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 1256 0.67 0.804499
Target:  5'- uGCGUGcggaucUUGUCGAGGuGCGCCUcGGCu -3'
miRNA:   3'- cUGCAC------AGCAGUUUCuUGUGGGcCCG- -5'
26289 5' -52.5 NC_005345.2 + 24778 0.67 0.804499
Target:  5'- uGCGggcGUCGUCcgaccucggcAAGGugguGCAgCCGGGCg -3'
miRNA:   3'- cUGCa--CAGCAG----------UUUCu---UGUgGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 23533 0.67 0.804499
Target:  5'- -cCGcUGgaaGUCGAGGAACGCCUGcucGGCg -3'
miRNA:   3'- cuGC-ACag-CAGUUUCUUGUGGGC---CCG- -5'
26289 5' -52.5 NC_005345.2 + 9625 0.67 0.804499
Target:  5'- cGACcUGcUCGaUCGGccGGGuccacucggGCACCCGGGCa -3'
miRNA:   3'- -CUGcAC-AGC-AGUU--UCU---------UGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 24901 0.67 0.79467
Target:  5'- cGACGUGaUCGg-AGAGAucuCACCgCGcGGCa -3'
miRNA:   3'- -CUGCAC-AGCagUUUCUu--GUGG-GC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.