Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26291 | 3' | -54.6 | NC_005345.2 | + | 35948 | 0.66 | 0.717925 |
Target: 5'- uGUGCuCGcCGCGCGGgcugCcgcUCGGGCCg -3' miRNA: 3'- -CACGuGUcGCGCGUCaa--Ga--AGCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 47889 | 0.66 | 0.695946 |
Target: 5'- -gGC-CGGCGUGCuGUgg-UCGuGCCg -3' miRNA: 3'- caCGuGUCGCGCGuCAagaAGCuCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 6002 | 0.66 | 0.673709 |
Target: 5'- -cGCguuGCGG-GUGCAGUUCUccggccggccgUUGGGCCa -3' miRNA: 3'- caCG---UGUCgCGCGUCAAGA-----------AGCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 21845 | 0.66 | 0.673709 |
Target: 5'- cUGCGCGgcauGCGUGCGGg----CGAGCUg -3' miRNA: 3'- cACGUGU----CGCGCGUCaagaaGCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 33294 | 0.66 | 0.681515 |
Target: 5'- aUGCggGCGGCgacgaucagaaccuGCGCGGUguagC-UCGGGCCg -3' miRNA: 3'- cACG--UGUCG--------------CGCGUCAa---GaAGCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 34924 | 0.66 | 0.684853 |
Target: 5'- cGUGCGCAGgGCGgCGGcga---GGGCCu -3' miRNA: 3'- -CACGUGUCgCGC-GUCaagaagCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 37731 | 0.66 | 0.706973 |
Target: 5'- -gGCGCGGCGCcgGCuGGUcggcgucgUCgaggUCGAGCUg -3' miRNA: 3'- caCGUGUCGCG--CG-UCA--------AGa---AGCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 4721 | 0.66 | 0.672592 |
Target: 5'- -cGCAuuccgauCAGCGCGCucgGGUUCacCGGGCUc -3' miRNA: 3'- caCGU-------GUCGCGCG---UCAAGaaGCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 2353 | 0.66 | 0.717925 |
Target: 5'- cGUGCuuGGCgGCGCAGcccggUCgcgaccucgCGGGCCc -3' miRNA: 3'- -CACGugUCG-CGCGUCa----AGaa-------GCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 27003 | 0.66 | 0.717925 |
Target: 5'- -cGcCACAGCGuCGCGGUagcgcgaccacgUCgaCGAGUCu -3' miRNA: 3'- caC-GUGUCGC-GCGUCA------------AGaaGCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 5683 | 0.66 | 0.711364 |
Target: 5'- uGUGCGuCGGUgaGCGCGGUcgUCUugaguccgucgaucuUCGAcGCCa -3' miRNA: 3'- -CACGU-GUCG--CGCGUCA--AGA---------------AGCU-CGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 40316 | 0.66 | 0.706973 |
Target: 5'- cGUGcCGCAGC-CGCGGcaga-CGAGCCc -3' miRNA: 3'- -CAC-GUGUCGcGCGUCaagaaGCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 12456 | 0.67 | 0.651308 |
Target: 5'- -cGCGCAGCuCGCGGggCaggCGAGgCg -3' miRNA: 3'- caCGUGUCGcGCGUCaaGaa-GCUCgG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 45395 | 0.67 | 0.640074 |
Target: 5'- gGUGUGCcaAGCccacGCGCgAGUUCUUCGA-CCg -3' miRNA: 3'- -CACGUG--UCG----CGCG-UCAAGAAGCUcGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 22704 | 0.67 | 0.640074 |
Target: 5'- -gGgGCGGCGUGUGGcaugacgUCaucgUCGAGCCg -3' miRNA: 3'- caCgUGUCGCGCGUCa------AGa---AGCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 46668 | 0.67 | 0.617595 |
Target: 5'- cGUGUACAucgagcucgcucGCGCGCAGgaCUgggCaGGCCu -3' miRNA: 3'- -CACGUGU------------CGCGCGUCaaGAa--GcUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 45835 | 0.67 | 0.60637 |
Target: 5'- cGUGCACGGCG-GCGGcg---CGGGCg -3' miRNA: 3'- -CACGUGUCGCgCGUCaagaaGCUCGg -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 35051 | 0.67 | 0.617595 |
Target: 5'- -aGCAguGCGCGCAGguggUCccaguggUCGAGg- -3' miRNA: 3'- caCGUguCGCGCGUCa---AGa------AGCUCgg -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 27159 | 0.67 | 0.617595 |
Target: 5'- cGUGCgGCAGCGgcccgaGCAGUaccgggcaUCggcgCGGGCCg -3' miRNA: 3'- -CACG-UGUCGCg-----CGUCA--------AGaa--GCUCGG- -5' |
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26291 | 3' | -54.6 | NC_005345.2 | + | 34371 | 0.67 | 0.617595 |
Target: 5'- -cGCACcggGGCGuUGCAG-UCgaCGAGCCc -3' miRNA: 3'- caCGUG---UCGC-GCGUCaAGaaGCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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