miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 3' -54.6 NC_005345.2 + 123 0.69 0.496842
Target:  5'- uGUGCACAGCagccacaauGCGUAGagugcugUCUaccgagCGGGCCg -3'
miRNA:   3'- -CACGUGUCG---------CGCGUCa------AGAa-----GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 874 0.7 0.465639
Target:  5'- -cGCACuGCGCGCGG----UCGGGCg -3'
miRNA:   3'- caCGUGuCGCGCGUCaagaAGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 1120 0.67 0.617595
Target:  5'- -aGCACAGcCGCGUAGccUCcccgGAGCCu -3'
miRNA:   3'- caCGUGUC-GCGCGUCa-AGaag-CUCGG- -5'
26291 3' -54.6 NC_005345.2 + 1175 0.75 0.238227
Target:  5'- cGUGCGCGGCGCacacgggcggcucgGCAGUcCggcccgCGGGCCa -3'
miRNA:   3'- -CACGUGUCGCG--------------CGUCAaGaa----GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 1427 0.68 0.572872
Target:  5'- aUGCACAGCuggcagcCGCAGcUCUUCGcccucaacuGCCg -3'
miRNA:   3'- cACGUGUCGc------GCGUCaAGAAGCu--------CGG- -5'
26291 3' -54.6 NC_005345.2 + 2353 0.66 0.717925
Target:  5'- cGUGCuuGGCgGCGCAGcccggUCgcgaccucgCGGGCCc -3'
miRNA:   3'- -CACGugUCG-CGCGUCa----AGaa-------GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 3140 0.67 0.662523
Target:  5'- cUGCACAGcCGUGCcgacGGcgUCggCGAGCUc -3'
miRNA:   3'- cACGUGUC-GCGCG----UCa-AGaaGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 3428 0.68 0.572872
Target:  5'- -gGCGCGGCG-GCGGgcggCgaugCGGGCCc -3'
miRNA:   3'- caCGUGUCGCgCGUCaa--Gaa--GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 4200 0.7 0.455465
Target:  5'- cGUGCagGCGGCGCgGCAGaugCUgcgguacgcCGAGCCg -3'
miRNA:   3'- -CACG--UGUCGCG-CGUCaa-GAa--------GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 4274 0.69 0.539828
Target:  5'- -gGCGguGCGgGCAGcUCgggcUCGGGCUg -3'
miRNA:   3'- caCGUguCGCgCGUCaAGa---AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 4721 0.66 0.672592
Target:  5'- -cGCAuuccgauCAGCGCGCucgGGUUCacCGGGCUc -3'
miRNA:   3'- caCGU-------GUCGCGCG---UCAAGaaGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 5683 0.66 0.711364
Target:  5'- uGUGCGuCGGUgaGCGCGGUcgUCUugaguccgucgaucuUCGAcGCCa -3'
miRNA:   3'- -CACGU-GUCG--CGCGUCA--AGA---------------AGCU-CGG- -5'
26291 3' -54.6 NC_005345.2 + 5767 0.7 0.465639
Target:  5'- -gGCGCAG-GCGCAGgugcUCggCGuGCCg -3'
miRNA:   3'- caCGUGUCgCGCGUCa---AGaaGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 6002 0.66 0.673709
Target:  5'- -cGCguuGCGG-GUGCAGUUCUccggccggccgUUGGGCCa -3'
miRNA:   3'- caCG---UGUCgCGCGUCAAGA-----------AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 8078 0.71 0.387845
Target:  5'- cGUGUACAGCGgacgacaGCuGUUCggCGAGCa -3'
miRNA:   3'- -CACGUGUCGCg------CGuCAAGaaGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 10166 0.69 0.528952
Target:  5'- -gGCGCAGaCGCGaCGGUgg-UCGcGCCg -3'
miRNA:   3'- caCGUGUC-GCGC-GUCAagaAGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 11654 0.68 0.561796
Target:  5'- cUGCACGGCG-GCGGUagcggccaaCUUCGGGgCg -3'
miRNA:   3'- cACGUGUCGCgCGUCAa--------GAAGCUCgG- -5'
26291 3' -54.6 NC_005345.2 + 12456 0.67 0.651308
Target:  5'- -cGCGCAGCuCGCGGggCaggCGAGgCg -3'
miRNA:   3'- caCGUGUCGcGCGUCaaGaa-GCUCgG- -5'
26291 3' -54.6 NC_005345.2 + 15986 0.73 0.327167
Target:  5'- uGUGCGCGGCGuCGaGGUUCaucgCGAGCa -3'
miRNA:   3'- -CACGUGUCGC-GCgUCAAGaa--GCUCGg -5'
26291 3' -54.6 NC_005345.2 + 16559 0.68 0.561796
Target:  5'- aGUGguCAuGgGCGCGGgucucCUUCGAGCg -3'
miRNA:   3'- -CACguGU-CgCGCGUCaa---GAAGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.