miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 3' -54.6 NC_005345.2 + 40169 0.8 0.107029
Target:  5'- cGUGUACGGCGCGCAGcugCggaUCGAGgCCg -3'
miRNA:   3'- -CACGUGUCGCGCGUCaa-Ga--AGCUC-GG- -5'
26291 3' -54.6 NC_005345.2 + 44656 0.67 0.662523
Target:  5'- cUGCuGCGGUGgGCAcggCUcgUCGAGCCg -3'
miRNA:   3'- cACG-UGUCGCgCGUcaaGA--AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 47943 0.67 0.662523
Target:  5'- -cGCGCGGCGUggcccGCGGgccggaCUgcCGAGCCg -3'
miRNA:   3'- caCGUGUCGCG-----CGUCaa----GAa-GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 47889 0.66 0.695946
Target:  5'- -gGC-CGGCGUGCuGUgg-UCGuGCCg -3'
miRNA:   3'- caCGuGUCGCGCGuCAagaAGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 4200 0.7 0.455465
Target:  5'- cGUGCagGCGGCGCgGCAGaugCUgcgguacgcCGAGCCg -3'
miRNA:   3'- -CACG--UGUCGCG-CGUCaa-GAa--------GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 5767 0.7 0.465639
Target:  5'- -gGCGCAG-GCGCAGgugcUCggCGuGCCg -3'
miRNA:   3'- caCGUGUCgCGCGUCa---AGaaGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 29272 0.69 0.486333
Target:  5'- -cGCAacauCGGCGCGCGGUUCgaggUCGcccgaGGCa -3'
miRNA:   3'- caCGU----GUCGCGCGUCAAGa---AGC-----UCGg -5'
26291 3' -54.6 NC_005345.2 + 23408 0.69 0.507452
Target:  5'- -aGCAgGGCGgGCAGcUCgUCGAGUUc -3'
miRNA:   3'- caCGUgUCGCgCGUCaAGaAGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 1427 0.68 0.572872
Target:  5'- aUGCACAGCuggcagcCGCAGcUCUUCGcccucaacuGCCg -3'
miRNA:   3'- cACGUGUCGc------GCGUCaAGAAGCu--------CGG- -5'
26291 3' -54.6 NC_005345.2 + 12456 0.67 0.651308
Target:  5'- -cGCGCAGCuCGCGGggCaggCGAGgCg -3'
miRNA:   3'- caCGUGUCGcGCGUCaaGaa-GCUCgG- -5'
26291 3' -54.6 NC_005345.2 + 46668 0.67 0.617595
Target:  5'- cGUGUACAucgagcucgcucGCGCGCAGgaCUgggCaGGCCu -3'
miRNA:   3'- -CACGUGU------------CGCGCGUCaaGAa--GcUCGG- -5'
26291 3' -54.6 NC_005345.2 + 23628 0.69 0.528952
Target:  5'- -gGCACGGCuGCGCAugguGUUCgcCGAGgCg -3'
miRNA:   3'- caCGUGUCG-CGCGU----CAAGaaGCUCgG- -5'
26291 3' -54.6 NC_005345.2 + 30963 0.75 0.240134
Target:  5'- gGUGCauuggaACGGCGCGCGGUUCgaggugaUCG-GCCc -3'
miRNA:   3'- -CACG------UGUCGCGCGUCAAGa------AGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 22704 0.67 0.640074
Target:  5'- -gGgGCGGCGUGUGGcaugacgUCaucgUCGAGCCg -3'
miRNA:   3'- caCgUGUCGCGCGUCa------AGa---AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 39271 0.73 0.29578
Target:  5'- cGUGCGCGGCGCGuCGGgaCUgcUCGA-CCg -3'
miRNA:   3'- -CACGUGUCGCGC-GUCaaGA--AGCUcGG- -5'
26291 3' -54.6 NC_005345.2 + 40609 0.69 0.507452
Target:  5'- -aGCACGGgGUGUAccUCUccgCGAGCCg -3'
miRNA:   3'- caCGUGUCgCGCGUcaAGAa--GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 45395 0.67 0.640074
Target:  5'- gGUGUGCcaAGCccacGCGCgAGUUCUUCGA-CCg -3'
miRNA:   3'- -CACGUG--UCG----CGCG-UCAAGAAGCUcGG- -5'
26291 3' -54.6 NC_005345.2 + 46018 0.67 0.662523
Target:  5'- -gGCACGGCuGUGCAGUggcgCcUCGgcgcgaaguauGGCCg -3'
miRNA:   3'- caCGUGUCG-CGCGUCAa---GaAGC-----------UCGG- -5'
26291 3' -54.6 NC_005345.2 + 33491 0.71 0.425686
Target:  5'- gGUGCAgguCGGCGCGgAGaUCggCGAGCa -3'
miRNA:   3'- -CACGU---GUCGCGCgUCaAGaaGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 874 0.7 0.465639
Target:  5'- -cGCACuGCGCGCGG----UCGGGCg -3'
miRNA:   3'- caCGUGuCGCGCGUCaagaAGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.