miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 3' -54.6 NC_005345.2 + 21770 1.13 0.000477
Target:  5'- cGUGCACAGCGCGCAGUUCUUCGAGCCg -3'
miRNA:   3'- -CACGUGUCGCGCGUCAAGAAGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 40169 0.8 0.107029
Target:  5'- cGUGUACGGCGCGCAGcugCggaUCGAGgCCg -3'
miRNA:   3'- -CACGUGUCGCGCGUCaa-Ga--AGCUC-GG- -5'
26291 3' -54.6 NC_005345.2 + 28020 0.77 0.178166
Target:  5'- aUGCGgAGCGCGCAGgccUCgacgucgUCGAGCUu -3'
miRNA:   3'- cACGUgUCGCGCGUCa--AGa------AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 27648 0.75 0.221633
Target:  5'- -gGCACAGCGCuuGCAgGUUCUcCGGGCg -3'
miRNA:   3'- caCGUGUCGCG--CGU-CAAGAaGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 1175 0.75 0.238227
Target:  5'- cGUGCGCGGCGCacacgggcggcucgGCAGUcCggcccgCGGGCCa -3'
miRNA:   3'- -CACGUGUCGCG--------------CGUCAaGaa----GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 30963 0.75 0.240134
Target:  5'- gGUGCauuggaACGGCGCGCGGUUCgaggugaUCG-GCCc -3'
miRNA:   3'- -CACG------UGUCGCGCGUCAAGa------AGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 39271 0.73 0.29578
Target:  5'- cGUGCGCGGCGCGuCGGgaCUgcUCGA-CCg -3'
miRNA:   3'- -CACGUGUCGCGC-GUCaaGA--AGCUcGG- -5'
26291 3' -54.6 NC_005345.2 + 15986 0.73 0.327167
Target:  5'- uGUGCGCGGCGuCGaGGUUCaucgCGAGCa -3'
miRNA:   3'- -CACGUGUCGC-GCgUCAAGaa--GCUCGg -5'
26291 3' -54.6 NC_005345.2 + 41400 0.72 0.343762
Target:  5'- cGUGCAgCGGCGUGCcg----UCGAGCCg -3'
miRNA:   3'- -CACGU-GUCGCGCGucaagaAGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 30655 0.72 0.352284
Target:  5'- -aGCGCAGCGCcuuugccgaacGCGGcgagcaUCUUCGGGUCg -3'
miRNA:   3'- caCGUGUCGCG-----------CGUCa-----AGAAGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 8078 0.71 0.387845
Target:  5'- cGUGUACAGCGgacgacaGCuGUUCggCGAGCa -3'
miRNA:   3'- -CACGUGUCGCg------CGuCAAGaaGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 19356 0.71 0.41602
Target:  5'- -gGCG-AGCGCGUAGUcgUCUUCGAGg- -3'
miRNA:   3'- caCGUgUCGCGCGUCA--AGAAGCUCgg -5'
26291 3' -54.6 NC_005345.2 + 43477 0.71 0.425686
Target:  5'- -gGCGCAGCGCGguCGGcUCggucCGGGCCc -3'
miRNA:   3'- caCGUGUCGCGC--GUCaAGaa--GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 33491 0.71 0.425686
Target:  5'- gGUGCAgguCGGCGCGgAGaUCggCGAGCa -3'
miRNA:   3'- -CACGU---GUCGCGCgUCaAGaaGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 4200 0.7 0.455465
Target:  5'- cGUGCagGCGGCGCgGCAGaugCUgcgguacgcCGAGCCg -3'
miRNA:   3'- -CACG--UGUCGCG-CGUCaa-GAa--------GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 874 0.7 0.465639
Target:  5'- -cGCACuGCGCGCGG----UCGGGCg -3'
miRNA:   3'- caCGUGuCGCGCGUCaagaAGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 5767 0.7 0.465639
Target:  5'- -gGCGCAG-GCGCAGgugcUCggCGuGCCg -3'
miRNA:   3'- caCGUGUCgCGCGUCa---AGaaGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 30849 0.69 0.4832
Target:  5'- aGUGCgacggcgaggacgaACAGCGCGCGGgugCUcCGGGUg -3'
miRNA:   3'- -CACG--------------UGUCGCGCGUCaa-GAaGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 29272 0.69 0.486333
Target:  5'- -cGCAacauCGGCGCGCGGUUCgaggUCGcccgaGGCa -3'
miRNA:   3'- caCGU----GUCGCGCGUCAAGa---AGC-----UCGg -5'
26291 3' -54.6 NC_005345.2 + 123 0.69 0.496842
Target:  5'- uGUGCACAGCagccacaauGCGUAGagugcugUCUaccgagCGGGCCg -3'
miRNA:   3'- -CACGUGUCG---------CGCGUCa------AGAa-----GCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.