Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26291 | 5' | -62.6 | NC_005345.2 | + | 17177 | 0.68 | 0.242405 |
Target: 5'- gGCGGCGuaGAAGU-CgGCGCCUUcCCACa -3' miRNA: 3'- -UGCCGC--CUUCAuGgCGCGGGGcGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 14579 | 0.67 | 0.280364 |
Target: 5'- cACGGCGGAcAGUgcgggcggcACCuuuuccagcagcaGCGCCCCGaCCu- -3' miRNA: 3'- -UGCCGCCU-UCA---------UGG-------------CGCGGGGC-GGug -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 7531 | 0.67 | 0.279003 |
Target: 5'- gGCGGCGGucguGGUGCUGauCCCgaccagguauccgaCGCCGCc -3' miRNA: 3'- -UGCCGCCu---UCAUGGCgcGGG--------------GCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 8339 | 0.67 | 0.274282 |
Target: 5'- cCGGCGGcGGUGCa-CGCCCCGgUCGu -3' miRNA: 3'- uGCCGCCuUCAUGgcGCGGGGC-GGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 34205 | 0.67 | 0.267648 |
Target: 5'- cGCGGCGcGAuccuucGCCGcCGCCcgcugcagCCGCCGCg -3' miRNA: 3'- -UGCCGC-CUuca---UGGC-GCGG--------GGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 3253 | 0.67 | 0.267648 |
Target: 5'- cGCGGCGcucggugccGAGGUACCccgugcgcagcuGCGUgCCGuCCACg -3' miRNA: 3'- -UGCCGC---------CUUCAUGG------------CGCGgGGC-GGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 24530 | 0.67 | 0.261144 |
Target: 5'- cACGGCGGAucGUGCagcaCGCaCCCGUCGg -3' miRNA: 3'- -UGCCGCCUu-CAUGgc--GCG-GGGCGGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 21990 | 0.68 | 0.25477 |
Target: 5'- cCGGCGGGAc-GCCGCGCagCGCCuCg -3' miRNA: 3'- uGCCGCCUUcaUGGCGCGggGCGGuG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 30946 | 0.68 | 0.252256 |
Target: 5'- cGCGGCGccccacucgGCgCGCGCCUCGCCGa -3' miRNA: 3'- -UGCCGCcuuca----UG-GCGCGGGGCGGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 32191 | 0.67 | 0.281047 |
Target: 5'- cCGGCcGAGGUGCCGCaggcGUCUCGUCGa -3' miRNA: 3'- uGCCGcCUUCAUGGCG----CGGGGCGGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 27483 | 0.67 | 0.293556 |
Target: 5'- gGCGGgGGGAGggagucacccccACCcCGCCCgaGCCGCu -3' miRNA: 3'- -UGCCgCCUUCa-----------UGGcGCGGGg-CGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 34157 | 0.67 | 0.294263 |
Target: 5'- gGCGGCGGccccgagGAGUgGCCcgGgGCCCCGaCCGa -3' miRNA: 3'- -UGCCGCC-------UUCA-UGG--CgCGGGGC-GGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 34516 | 0.66 | 0.339945 |
Target: 5'- cGCGGUcGAGGcggGCCGCgGCCUCGCgGg -3' miRNA: 3'- -UGCCGcCUUCa--UGGCG-CGGGGCGgUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 38724 | 0.66 | 0.332116 |
Target: 5'- cGCGGUGGuuGUcGCgCGCGaCCUCGCacaGCg -3' miRNA: 3'- -UGCCGCCuuCA-UG-GCGC-GGGGCGg--UG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 8788 | 0.66 | 0.332116 |
Target: 5'- cGCGGUgaucgcccccacGGccGUACC-CGUcgCCCGCCACg -3' miRNA: 3'- -UGCCG------------CCuuCAUGGcGCG--GGGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 38997 | 0.66 | 0.332116 |
Target: 5'- uGCGGCGGgcGcuCCGCagagcgGCCgCCGCCu- -3' miRNA: 3'- -UGCCGCCuuCauGGCG------CGG-GGCGGug -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 268 | 0.66 | 0.327482 |
Target: 5'- uCGGCGGggGUcuucucguacACgGUagggcacgcagcaccGCCCCGCCc- -3' miRNA: 3'- uGCCGCCuuCA----------UGgCG---------------CGGGGCGGug -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 7775 | 0.66 | 0.32442 |
Target: 5'- uCGGCGuccauGAGUccguugccgagcGCUGCGCCgCCGCCGg -3' miRNA: 3'- uGCCGCc----UUCA------------UGGCGCGG-GGCGGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 3433 | 0.66 | 0.316858 |
Target: 5'- gGCGGCGGgcGgcgAUgCGgGCCCCGagcuCGCg -3' miRNA: 3'- -UGCCGCCuuCa--UG-GCgCGGGGCg---GUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 36748 | 0.66 | 0.309429 |
Target: 5'- uCGGCcGAc---UCGCGCCUCGCCGCu -3' miRNA: 3'- uGCCGcCUucauGGCGCGGGGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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