Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26292 | 3' | -54.4 | NC_005345.2 | + | 38519 | 0.65 | 0.774759 |
Target: 5'- -aGUCAcGCGUGcugcucgacccggGCCGACcggCCG-CGCc -3' miRNA: 3'- caCAGUuCGCAC-------------UGGCUGa--GGCaGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 32215 | 0.66 | 0.765604 |
Target: 5'- -cGUCGAGCGgccGGCCGuacCUCaugaGcCGCa -3' miRNA: 3'- caCAGUUCGCa--CUGGCu--GAGg---CaGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 8958 | 0.66 | 0.765604 |
Target: 5'- gGUGcUCGGGCucGACCugucGCUCCGUCGa -3' miRNA: 3'- -CAC-AGUUCGcaCUGGc---UGAGGCAGCg -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 4651 | 0.66 | 0.7553 |
Target: 5'- -gGgggCAGGCGUGAagaCGACUCac-CGCg -3' miRNA: 3'- caCa--GUUCGCACUg--GCUGAGgcaGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 38024 | 0.66 | 0.7553 |
Target: 5'- gGUGgcc-GCGUGGacgUCGACUCUGUgGCa -3' miRNA: 3'- -CACaguuCGCACU---GGCUGAGGCAgCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 28780 | 0.66 | 0.7553 |
Target: 5'- -gGUCAugaGGCGcaUGACgCGuCcCCGUCGCu -3' miRNA: 3'- caCAGU---UCGC--ACUG-GCuGaGGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 40770 | 0.66 | 0.744869 |
Target: 5'- -cGUCGGGCcgGUcGGCCGGCgcgggCgUGUCGCg -3' miRNA: 3'- caCAGUUCG--CA-CUGGCUGa----G-GCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 37709 | 0.66 | 0.744869 |
Target: 5'- gGUGagAcAGCGUG-CCGAUUCCGg-GCa -3' miRNA: 3'- -CACagU-UCGCACuGGCUGAGGCagCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 38971 | 0.66 | 0.734322 |
Target: 5'- -gGUCGAGaucGGCgCGACcaCCGUCGCg -3' miRNA: 3'- caCAGUUCgcaCUG-GCUGa-GGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 14581 | 0.66 | 0.734322 |
Target: 5'- cGUGUCGgcacuacacaaGGCG-GAgCGGCUCCGgaUCGa -3' miRNA: 3'- -CACAGU-----------UCGCaCUgGCUGAGGC--AGCg -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 19811 | 0.66 | 0.723671 |
Target: 5'- -aGUCGacggucugcugcAGCucgGUGACCGGCaCgGUCGCg -3' miRNA: 3'- caCAGU------------UCG---CACUGGCUGaGgCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 34632 | 0.66 | 0.723671 |
Target: 5'- -aGUacgGGGCGUGGCUGcugccGCUCggCGUCGCg -3' miRNA: 3'- caCAg--UUCGCACUGGC-----UGAG--GCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 47097 | 0.66 | 0.723671 |
Target: 5'- ---cCAGGUGUGGCCGAUcgugUCCuGUgGCu -3' miRNA: 3'- cacaGUUCGCACUGGCUG----AGG-CAgCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 2368 | 0.67 | 0.712929 |
Target: 5'- ---aCGGcGCGUGACCucC-CCGUCGCg -3' miRNA: 3'- cacaGUU-CGCACUGGcuGaGGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 41577 | 0.67 | 0.702105 |
Target: 5'- cGUGcucgCGGGCGUGcucggucgugauGCCGuGCacggCCGUCGCa -3' miRNA: 3'- -CACa---GUUCGCAC------------UGGC-UGa---GGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 1646 | 0.67 | 0.702105 |
Target: 5'- gGUGgCAGGCaggGUGACCGugUUuccagcggCGUCGUa -3' miRNA: 3'- -CACaGUUCG---CACUGGCugAG--------GCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 9655 | 0.67 | 0.691213 |
Target: 5'- cGUGUgGGGCG-GGCUGACguaCCGcgagCGCc -3' miRNA: 3'- -CACAgUUCGCaCUGGCUGa--GGCa---GCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 24856 | 0.67 | 0.691213 |
Target: 5'- -gGUCccgcGGCGUGACgGACgcgaCCG-CGCu -3' miRNA: 3'- caCAGu---UCGCACUGgCUGa---GGCaGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 38249 | 0.67 | 0.669267 |
Target: 5'- gGUG-CAGGCGUGAUCGAUgaCGU-GCg -3' miRNA: 3'- -CACaGUUCGCACUGGCUGagGCAgCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 24284 | 0.68 | 0.658236 |
Target: 5'- -gGUCAAGgGUGACCcGGCgugcuuugCC-UCGCu -3' miRNA: 3'- caCAGUUCgCACUGG-CUGa-------GGcAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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