Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26316 | 3' | -62.5 | NC_005345.2 | + | 46615 | 0.66 | 0.386057 |
Target: 5'- gGCCGGcgcCGGGuGCCCCGUcGCCGuuGa -3' miRNA: 3'- gCGGUCa--GCCU-CGGGGCA-UGGCgcCc -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 34176 | 0.66 | 0.357926 |
Target: 5'- gGCC---CGGGGCCCCGaccgacugaucacGCCGCGGc -3' miRNA: 3'- gCGGucaGCCUCGGGGCa------------UGGCGCCc -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 24958 | 0.66 | 0.357926 |
Target: 5'- aGCCcguAGUCGGucgacagcgaaccGCCCCGcGCCauuucgaggaGCGGGa -3' miRNA: 3'- gCGG---UCAGCCu------------CGGGGCaUGG----------CGCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 31804 | 0.66 | 0.353113 |
Target: 5'- uCGCCguccgGGUCGGGGUCCgggaugcgugCGUGCacccgcgGCGGGu -3' miRNA: 3'- -GCGG-----UCAGCCUCGGG----------GCAUGg------CGCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 12647 | 0.66 | 0.353113 |
Target: 5'- uCGCCGGggcgCGGucGGCCgCCGUuggcguacCCGcCGGGu -3' miRNA: 3'- -GCGGUCa---GCC--UCGG-GGCAu-------GGC-GCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 5229 | 0.66 | 0.353113 |
Target: 5'- aCGCC-GUCGGGGUgCCCGcgguacACgGUGGGc -3' miRNA: 3'- -GCGGuCAGCCUCG-GGGCa-----UGgCGCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 43482 | 0.66 | 0.345194 |
Target: 5'- aGCgCGGUCGGcucGGUCCgGgcCCGcCGGGc -3' miRNA: 3'- gCG-GUCAGCC---UCGGGgCauGGC-GCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 21459 | 0.66 | 0.345194 |
Target: 5'- uGCCGuGUCGGcGCgCCCGgucaCGCGGc -3' miRNA: 3'- gCGGU-CAGCCuCG-GGGCaug-GCGCCc -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 24972 | 0.66 | 0.344409 |
Target: 5'- gGCCGGUCGaGuGGCaagugCCCGUcgucgaggugcucGCCGCGGu -3' miRNA: 3'- gCGGUCAGC-C-UCG-----GGGCA-------------UGGCGCCc -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 5276 | 0.66 | 0.36116 |
Target: 5'- gGCgGGcUCGGGGgUCgGgUACUGCGGGg -3' miRNA: 3'- gCGgUC-AGCCUCgGGgC-AUGGCGCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 46074 | 0.66 | 0.36116 |
Target: 5'- aGgCGGcCGGGGCCgCCGggGCCuGCGcGGa -3' miRNA: 3'- gCgGUCaGCCUCGG-GGCa-UGG-CGC-CC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 1133 | 0.66 | 0.369334 |
Target: 5'- aGCCucccCGGAGCCugggacaccaCCGcGCCGCGaGGg -3' miRNA: 3'- gCGGuca-GCCUCGG----------GGCaUGGCGC-CC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 37107 | 0.66 | 0.386057 |
Target: 5'- gCGCCGGUCuccagcucggcaGGGGCCaCGUAgC-CGGGc -3' miRNA: 3'- -GCGGUCAG------------CCUCGGgGCAUgGcGCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 27548 | 0.66 | 0.386057 |
Target: 5'- gGCCGGau-GAGUCCCGggUGCCGUucGGGg -3' miRNA: 3'- gCGGUCagcCUCGGGGC--AUGGCG--CCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 45398 | 0.66 | 0.377633 |
Target: 5'- cCGuCCAG-CGGAGCCaguCCGacagGCggCGCGGGc -3' miRNA: 3'- -GC-GGUCaGCCUCGG---GGCa---UG--GCGCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 35281 | 0.66 | 0.377633 |
Target: 5'- aGCCGG-CGGAGCgagCUGUACuuguccgcgagCGUGGGg -3' miRNA: 3'- gCGGUCaGCCUCGg--GGCAUG-----------GCGCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 3684 | 0.66 | 0.377633 |
Target: 5'- uGCCGGgUGGucGCCCaCGUagagaaugcucuGCCGgGGGg -3' miRNA: 3'- gCGGUCaGCCu-CGGG-GCA------------UGGCgCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 31522 | 0.66 | 0.377633 |
Target: 5'- gGUCAGgacggagaacgCGGcgugcaucacAGCCCCuuggGCCGCGGGc -3' miRNA: 3'- gCGGUCa----------GCC----------UCGGGGca--UGGCGCCC- -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 11316 | 0.66 | 0.369334 |
Target: 5'- cCGCaCAGUCaGGGCCCCcggGCCGUuccGGc -3' miRNA: 3'- -GCG-GUCAGcCUCGGGGca-UGGCG---CCc -5' |
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26316 | 3' | -62.5 | NC_005345.2 | + | 18468 | 0.66 | 0.369334 |
Target: 5'- aGCCGGcCGGAucgucgacccauGCCCgGgUACC-CGGGu -3' miRNA: 3'- gCGGUCaGCCU------------CGGGgC-AUGGcGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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