miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26316 3' -62.5 NC_005345.2 + 8022 1.09 0.000232
Target:  5'- cCGCCAGUCGGAGCCCCGUACCGCGGGc -3'
miRNA:   3'- -GCGGUCAGCCUCGGGGCAUGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 14976 0.8 0.037381
Target:  5'- aGUCGGUCGGGGCCCCGgGCCacuccuCGGGg -3'
miRNA:   3'- gCGGUCAGCCUCGGGGCaUGGc-----GCCC- -5'
26316 3' -62.5 NC_005345.2 + 25432 0.76 0.078606
Target:  5'- cCGCCAGgaagCGagcgcaGAGCCCCGUACCGCu-- -3'
miRNA:   3'- -GCGGUCa---GC------CUCGGGGCAUGGCGccc -5'
26316 3' -62.5 NC_005345.2 + 17148 0.75 0.087614
Target:  5'- aCGUUGGUCGGGGCggUCGUGCCGaCGGGg -3'
miRNA:   3'- -GCGGUCAGCCUCGg-GGCAUGGC-GCCC- -5'
26316 3' -62.5 NC_005345.2 + 38895 0.73 0.127446
Target:  5'- aCGgCAGagaUCGGcGCCCgGgugACCGCGGGg -3'
miRNA:   3'- -GCgGUC---AGCCuCGGGgCa--UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 510 0.72 0.149211
Target:  5'- uGCCGGgucaGGAcgccGCCCUGUggGCCGCGGa -3'
miRNA:   3'- gCGGUCag--CCU----CGGGGCA--UGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 12463 0.71 0.174308
Target:  5'- gCGCgCAGUCGGcAGCagcgcgUCCGUGCgcaCGCGGGc -3'
miRNA:   3'- -GCG-GUCAGCC-UCG------GGGCAUG---GCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 759 0.71 0.174308
Target:  5'- uGCUcGUgGGAuaGCCCCGgccgGCgGCGGGg -3'
miRNA:   3'- gCGGuCAgCCU--CGGGGCa---UGgCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 12107 0.71 0.174308
Target:  5'- cCGCCGGcCGGAucccggcucGCCCgGUGCCGCu-- -3'
miRNA:   3'- -GCGGUCaGCCU---------CGGGgCAUGGCGccc -5'
26316 3' -62.5 NC_005345.2 + 42859 0.71 0.183477
Target:  5'- gGCCGGgaugaaGGcGGCCCCGcacgUGCUGUGGGa -3'
miRNA:   3'- gCGGUCag----CC-UCGGGGC----AUGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 23128 0.7 0.188219
Target:  5'- gGCgAGUCGGGucuGUCCCGUGCagCGCGaGGu -3'
miRNA:   3'- gCGgUCAGCCU---CGGGGCAUG--GCGC-CC- -5'
26316 3' -62.5 NC_005345.2 + 43089 0.7 0.188219
Target:  5'- aGCCAcUCgGGAGCCcgCCGUAgCGCGGu -3'
miRNA:   3'- gCGGUcAG-CCUCGG--GGCAUgGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 9503 0.7 0.193069
Target:  5'- uGgCAGUCGcGGGCCCUGUGCgCGCa-- -3'
miRNA:   3'- gCgGUCAGC-CUCGGGGCAUG-GCGccc -5'
26316 3' -62.5 NC_005345.2 + 35198 0.7 0.202586
Target:  5'- aGgCAGagGGGcGCCCCGUugcuguucaggcgGCCGUGGGc -3'
miRNA:   3'- gCgGUCagCCU-CGGGGCA-------------UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 2261 0.7 0.203098
Target:  5'- gCGCCAGauucUCGGuGCgCUCGU-CCGCaGGGg -3'
miRNA:   3'- -GCGGUC----AGCCuCG-GGGCAuGGCG-CCC- -5'
26316 3' -62.5 NC_005345.2 + 15173 0.7 0.213576
Target:  5'- cCGCCcuuGUCGGcGCCCgacUGgaauCCGCGGGu -3'
miRNA:   3'- -GCGGu--CAGCCuCGGG---GCau--GGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 9726 0.69 0.23016
Target:  5'- uCGCCGGggucgagCGGgucGGCCUCGaUGCUGCGGu -3'
miRNA:   3'- -GCGGUCa------GCC---UCGGGGC-AUGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 45561 0.69 0.23016
Target:  5'- gGCCgaGGUCGGGGCgggCCGguugcgGCCGgGGGc -3'
miRNA:   3'- gCGG--UCAGCCUCGg--GGCa-----UGGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 43937 0.69 0.235925
Target:  5'- gGCCGGcCGcGAGCUgcccggCCGUGCCG-GGGc -3'
miRNA:   3'- gCGGUCaGC-CUCGG------GGCAUGGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 43901 0.69 0.235925
Target:  5'- cCGCCcGUCac-GCCaCCGUguACCGCGGGc -3'
miRNA:   3'- -GCGGuCAGccuCGG-GGCA--UGGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.