miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26316 3' -62.5 NC_005345.2 + 14976 0.8 0.037381
Target:  5'- aGUCGGUCGGGGCCCCGgGCCacuccuCGGGg -3'
miRNA:   3'- gCGGUCAGCCUCGGGGCaUGGc-----GCCC- -5'
26316 3' -62.5 NC_005345.2 + 21686 0.67 0.314804
Target:  5'- cCGCCccccUCaGGGCCCgggagGUGCUGCGGGg -3'
miRNA:   3'- -GCGGuc--AGcCUCGGGg----CAUGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 30103 0.67 0.322208
Target:  5'- gGCCGGguUCGccGAcCCCCGUACCGaCGGc -3'
miRNA:   3'- gCGGUC--AGC--CUcGGGGCAUGGC-GCCc -5'
26316 3' -62.5 NC_005345.2 + 48368 0.66 0.386057
Target:  5'- gGcCCGGUCGGcaucCCCCGccGCCGgcCGGGg -3'
miRNA:   3'- gC-GGUCAGCCuc--GGGGCa-UGGC--GCCC- -5'
26316 3' -62.5 NC_005345.2 + 42859 0.71 0.183477
Target:  5'- gGCCGGgaugaaGGcGGCCCCGcacgUGCUGUGGGa -3'
miRNA:   3'- gCGGUCag----CC-UCGGGGC----AUGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 23128 0.7 0.188219
Target:  5'- gGCgAGUCGGGucuGUCCCGUGCagCGCGaGGu -3'
miRNA:   3'- gCGgUCAGCCU---CGGGGCAUG--GCGC-CC- -5'
26316 3' -62.5 NC_005345.2 + 2261 0.7 0.203098
Target:  5'- gCGCCAGauucUCGGuGCgCUCGU-CCGCaGGGg -3'
miRNA:   3'- -GCGGUC----AGCCuCG-GGGCAuGGCG-CCC- -5'
26316 3' -62.5 NC_005345.2 + 43901 0.69 0.235925
Target:  5'- cCGCCcGUCac-GCCaCCGUguACCGCGGGc -3'
miRNA:   3'- -GCGGuCAGccuCGG-GGCA--UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 20501 0.68 0.266583
Target:  5'- -uUCGGUCGGGGCUuuCCGcUGCCcCGGGa -3'
miRNA:   3'- gcGGUCAGCCUCGG--GGC-AUGGcGCCC- -5'
26316 3' -62.5 NC_005345.2 + 48824 0.67 0.314804
Target:  5'- gGUCAGagCGGAgccGCCCCGccccuuCCGgGGGg -3'
miRNA:   3'- gCGGUCa-GCCU---CGGGGCau----GGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 35469 0.68 0.293368
Target:  5'- aGCCA-UCGGAGCggCCGguaagugGCUGUGGGa -3'
miRNA:   3'- gCGGUcAGCCUCGg-GGCa------UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 13493 0.69 0.244199
Target:  5'- gCGUCGGUgCGGuggcgcggcgAGCaCCCGUcgaucguguucugggACCGCGGGc -3'
miRNA:   3'- -GCGGUCA-GCC----------UCG-GGGCA---------------UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 38895 0.73 0.127446
Target:  5'- aCGgCAGagaUCGGcGCCCgGgugACCGCGGGg -3'
miRNA:   3'- -GCgGUC---AGCCuCGGGgCa--UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 20290 0.67 0.30753
Target:  5'- uGCCcGcCGaaGAGcCCCCGgacgACUGCGGGa -3'
miRNA:   3'- gCGGuCaGC--CUC-GGGGCa---UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 510 0.72 0.149211
Target:  5'- uGCCGGgucaGGAcgccGCCCUGUggGCCGCGGa -3'
miRNA:   3'- gCGGUCag--CCU----CGGGGCA--UGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 8918 0.69 0.241811
Target:  5'- uCGCCAGgaucacggCGGccgcCCCCGUgggcggGCUGCGGGu -3'
miRNA:   3'- -GCGGUCa-------GCCuc--GGGGCA------UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 23571 0.67 0.30753
Target:  5'- gGCCGcGUCcGAGCUgCG-GCUGCGGGu -3'
miRNA:   3'- gCGGU-CAGcCUCGGgGCaUGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 47917 0.67 0.322208
Target:  5'- cCGCCGGaaagCcauGGGaCCCGUACCGCGcGGc -3'
miRNA:   3'- -GCGGUCa---Gc--CUCgGGGCAUGGCGC-CC- -5'
26316 3' -62.5 NC_005345.2 + 12107 0.71 0.174308
Target:  5'- cCGCCGGcCGGAucccggcucGCCCgGUGCCGCu-- -3'
miRNA:   3'- -GCGGUCaGCCU---------CGGGgCAUGGCGccc -5'
26316 3' -62.5 NC_005345.2 + 9503 0.7 0.193069
Target:  5'- uGgCAGUCGcGGGCCCUGUGCgCGCa-- -3'
miRNA:   3'- gCgGUCAGC-CUCGGGGCAUG-GCGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.