miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26316 3' -62.5 NC_005345.2 + 510 0.72 0.149211
Target:  5'- uGCCGGgucaGGAcgccGCCCUGUggGCCGCGGa -3'
miRNA:   3'- gCGGUCag--CCU----CGGGGCA--UGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 759 0.71 0.174308
Target:  5'- uGCUcGUgGGAuaGCCCCGgccgGCgGCGGGg -3'
miRNA:   3'- gCGGuCAgCCU--CGGGGCa---UGgCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 1133 0.66 0.369334
Target:  5'- aGCCucccCGGAGCCugggacaccaCCGcGCCGCGaGGg -3'
miRNA:   3'- gCGGuca-GCCUCGG----------GGCaUGGCGC-CC- -5'
26316 3' -62.5 NC_005345.2 + 1386 0.68 0.28648
Target:  5'- uCGuCCGGUCucGGUCCCGgugaCGCGGGg -3'
miRNA:   3'- -GC-GGUCAGccUCGGGGCaug-GCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 2261 0.7 0.203098
Target:  5'- gCGCCAGauucUCGGuGCgCUCGU-CCGCaGGGg -3'
miRNA:   3'- -GCGGUC----AGCCuCG-GGGCAuGGCG-CCC- -5'
26316 3' -62.5 NC_005345.2 + 3093 0.66 0.377633
Target:  5'- cCGCCuGaucgacccUCGG-GCCCCGgacaUACCGaGGGg -3'
miRNA:   3'- -GCGGuC--------AGCCuCGGGGC----AUGGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 3684 0.66 0.377633
Target:  5'- uGCCGGgUGGucGCCCaCGUagagaaugcucuGCCGgGGGg -3'
miRNA:   3'- gCGGUCaGCCu-CGGG-GCA------------UGGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 5229 0.66 0.353113
Target:  5'- aCGCC-GUCGGGGUgCCCGcgguacACgGUGGGc -3'
miRNA:   3'- -GCGGuCAGCCUCG-GGGCa-----UGgCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 5276 0.66 0.36116
Target:  5'- gGCgGGcUCGGGGgUCgGgUACUGCGGGg -3'
miRNA:   3'- gCGgUC-AGCCUCgGGgC-AUGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 5285 0.66 0.368511
Target:  5'- cCGCCg--CGGAGUCCCG-GCCGacgccccgucgacCGGGc -3'
miRNA:   3'- -GCGGucaGCCUCGGGGCaUGGC-------------GCCC- -5'
26316 3' -62.5 NC_005345.2 + 8022 1.09 0.000232
Target:  5'- cCGCCAGUCGGAGCCCCGUACCGCGGGc -3'
miRNA:   3'- -GCGGUCAGCCUCGGGGCAUGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 8822 0.67 0.337403
Target:  5'- aCGCCGGcCGG-GCUCgucUGCCGCGGc -3'
miRNA:   3'- -GCGGUCaGCCuCGGGgc-AUGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 8918 0.69 0.241811
Target:  5'- uCGCCAGgaucacggCGGccgcCCCCGUgggcggGCUGCGGGu -3'
miRNA:   3'- -GCGGUCa-------GCCuc--GGGGCA------UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 9306 0.67 0.328982
Target:  5'- uGCCAGgugCGGccggccgAGCCCgCGaUGCCGaGGGu -3'
miRNA:   3'- gCGGUCa--GCC-------UCGGG-GC-AUGGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 9503 0.7 0.193069
Target:  5'- uGgCAGUCGcGGGCCCUGUGCgCGCa-- -3'
miRNA:   3'- gCgGUCAGC-CUCGGGGCAUG-GCGccc -5'
26316 3' -62.5 NC_005345.2 + 9726 0.69 0.23016
Target:  5'- uCGCCGGggucgagCGGgucGGCCUCGaUGCUGCGGu -3'
miRNA:   3'- -GCGGUCa------GCC---UCGGGGC-AUGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 10620 0.66 0.353113
Target:  5'- gGCCGGUCGGcccgggucgagcAGCaCgCGUgacucagggACCGCGGa -3'
miRNA:   3'- gCGGUCAGCC------------UCG-GgGCA---------UGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 11316 0.66 0.369334
Target:  5'- cCGCaCAGUCaGGGCCCCcggGCCGUuccGGc -3'
miRNA:   3'- -GCG-GUCAGcCUCGGGGca-UGGCG---CCc -5'
26316 3' -62.5 NC_005345.2 + 11360 0.66 0.386057
Target:  5'- cCGCCAa-CGGcagcAGCCCCGgucgcgGCCgccuGCGGGc -3'
miRNA:   3'- -GCGGUcaGCC----UCGGGGCa-----UGG----CGCCC- -5'
26316 3' -62.5 NC_005345.2 + 12107 0.71 0.174308
Target:  5'- cCGCCGGcCGGAucccggcucGCCCgGUGCCGCu-- -3'
miRNA:   3'- -GCGGUCaGCCU---------CGGGgCAUGGCGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.