miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26320 3' -56.4 NC_005345.2 + 43548 0.66 0.626965
Target:  5'- nCGAGCCCG---GCGccCCACGGCacgaGCg -3'
miRNA:   3'- -GCUCGGGCguaUGCuaGGUGUCGg---UG- -5'
26320 3' -56.4 NC_005345.2 + 45001 0.66 0.582844
Target:  5'- uCGAcaCCCGCucgACGAgcgCCgcgaGCAGCCGCu -3'
miRNA:   3'- -GCUc-GGGCGua-UGCUa--GG----UGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 41812 0.66 0.582844
Target:  5'- gCGGGCcacaCCGCGUGCGAcUCgGCGuCCGCc -3'
miRNA:   3'- -GCUCG----GGCGUAUGCU-AGgUGUcGGUG- -5'
26320 3' -56.4 NC_005345.2 + 12156 0.66 0.582844
Target:  5'- cCGAGCCCGUAcucgACaGGUUCGacaAGCCGa -3'
miRNA:   3'- -GCUCGGGCGUa---UG-CUAGGUg--UCGGUg -5'
26320 3' -56.4 NC_005345.2 + 27141 0.66 0.582844
Target:  5'- gCGGGCCCgGCAUGCcgccgugCgGCAGCgGCc -3'
miRNA:   3'- -GCUCGGG-CGUAUGcua----GgUGUCGgUG- -5'
26320 3' -56.4 NC_005345.2 + 8022 0.66 0.582844
Target:  5'- aCGAGCUCGaCGggcuCGAccUCgCGCAGCUGCa -3'
miRNA:   3'- -GCUCGGGC-GUau--GCU--AG-GUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 29825 0.66 0.593834
Target:  5'- aGcAGCCCgGCAU-CG--UCGCGGCCACg -3'
miRNA:   3'- gC-UCGGG-CGUAuGCuaGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 3592 0.66 0.593834
Target:  5'- -cGGCCCGCcc-CGA-CCuCGGCCGCu -3'
miRNA:   3'- gcUCGGGCGuauGCUaGGuGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 35051 0.66 0.593834
Target:  5'- --cGCCgGUGUucucgGCGAUCUggACGGCCGCg -3'
miRNA:   3'- gcuCGGgCGUA-----UGCUAGG--UGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 15847 0.66 0.593834
Target:  5'- gCGGGCCCGCucGCGGUgggcgaGCAGCUcgGCg -3'
miRNA:   3'- -GCUCGGGCGuaUGCUAgg----UGUCGG--UG- -5'
26320 3' -56.4 NC_005345.2 + 17372 0.66 0.593834
Target:  5'- uCGGGCUCGUacucgGUGCcGUCCGCGGugguCCGCg -3'
miRNA:   3'- -GCUCGGGCG-----UAUGcUAGGUGUC----GGUG- -5'
26320 3' -56.4 NC_005345.2 + 39460 0.66 0.593834
Target:  5'- -cGGCCCGCugauCGGcCUGCAGCCGg -3'
miRNA:   3'- gcUCGGGCGuau-GCUaGGUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 32742 0.66 0.626965
Target:  5'- uGGGCCCGCuugcucacaGCGGUgUACgAGCCGa -3'
miRNA:   3'- gCUCGGGCGua-------UGCUAgGUG-UCGGUg -5'
26320 3' -56.4 NC_005345.2 + 12760 0.66 0.626965
Target:  5'- gGGGUCC-CAcACG--CCGCGGCCGCg -3'
miRNA:   3'- gCUCGGGcGUaUGCuaGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 1515 0.66 0.626965
Target:  5'- --uGCCCGCAaaACGAUCUugGGUguCg -3'
miRNA:   3'- gcuCGGGCGUa-UGCUAGGugUCGguG- -5'
26320 3' -56.4 NC_005345.2 + 37176 0.66 0.615904
Target:  5'- gCGAGCCgacccgacuugaCGUgGUGCGGcuggaUCCACAGCCGu -3'
miRNA:   3'- -GCUCGG------------GCG-UAUGCU-----AGGUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 25054 0.66 0.615904
Target:  5'- aCGAG-CgGCGUACGcaccgagugCCACGGCCGg -3'
miRNA:   3'- -GCUCgGgCGUAUGCua-------GGUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 7991 0.66 0.604857
Target:  5'- --cGUCCGCGUugACGGUCUGCacaguggcgAGCCGCc -3'
miRNA:   3'- gcuCGGGCGUA--UGCUAGGUG---------UCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 43098 0.66 0.604857
Target:  5'- gGAGCCCGCcguagcGCGGUgagCUGCAGUgGCu -3'
miRNA:   3'- gCUCGGGCGua----UGCUA---GGUGUCGgUG- -5'
26320 3' -56.4 NC_005345.2 + 48619 0.66 0.593834
Target:  5'- uGAGCUCGUGU----UCCGCGGcCCACa -3'
miRNA:   3'- gCUCGGGCGUAugcuAGGUGUC-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.