miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26320 3' -56.4 NC_005345.2 + 163 0.68 0.493951
Target:  5'- gCGGGCCgGCGUGCuccCCACAcgcgucagacgcauGCCGCu -3'
miRNA:   3'- -GCUCGGgCGUAUGcuaGGUGU--------------CGGUG- -5'
26320 3' -56.4 NC_005345.2 + 1099 0.68 0.497066
Target:  5'- aCGAGCggugCGCGccggACGAg-CACAGCCGCg -3'
miRNA:   3'- -GCUCGg---GCGUa---UGCUagGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 1252 0.72 0.283868
Target:  5'- gCGGG-CUGCGgcACGAUCCACAGCaCGCc -3'
miRNA:   3'- -GCUCgGGCGUa-UGCUAGGUGUCG-GUG- -5'
26320 3' -56.4 NC_005345.2 + 1515 0.66 0.626965
Target:  5'- --uGCCCGCAaaACGAUCUugGGUguCg -3'
miRNA:   3'- gcuCGGGCGUa-UGCUAGGugUCGguG- -5'
26320 3' -56.4 NC_005345.2 + 2042 0.67 0.550154
Target:  5'- gCGGGCCCggcGCGgcccgGCGggCCGCGGCgAa -3'
miRNA:   3'- -GCUCGGG---CGUa----UGCuaGGUGUCGgUg -5'
26320 3' -56.4 NC_005345.2 + 2750 0.7 0.363055
Target:  5'- -cGGCCCGCAUguggaGCGcgCCACGcGCgGCg -3'
miRNA:   3'- gcUCGGGCGUA-----UGCuaGGUGU-CGgUG- -5'
26320 3' -56.4 NC_005345.2 + 3347 0.67 0.539378
Target:  5'- gCGGGCgCCGCGUuCGAUCgCGCGGa-GCa -3'
miRNA:   3'- -GCUCG-GGCGUAuGCUAG-GUGUCggUG- -5'
26320 3' -56.4 NC_005345.2 + 3454 0.69 0.436619
Target:  5'- --cGCCCGCcgggACcuGUCCACGGUCGCg -3'
miRNA:   3'- gcuCGGGCGua--UGc-UAGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 3592 0.66 0.593834
Target:  5'- -cGGCCCGCcc-CGA-CCuCGGCCGCu -3'
miRNA:   3'- gcUCGGGCGuauGCUaGGuGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 3624 0.71 0.306098
Target:  5'- -cGGCCCGCgccgcagguGUGCcGUCCGCAGCCcgGCg -3'
miRNA:   3'- gcUCGGGCG---------UAUGcUAGGUGUCGG--UG- -5'
26320 3' -56.4 NC_005345.2 + 5015 1.11 0.000474
Target:  5'- aCGAGCCCGCAUACGAUCCACAGCCACg -3'
miRNA:   3'- -GCUCGGGCGUAUGCUAGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 5617 0.68 0.466336
Target:  5'- aCGAGCUCG---GCGAUCCGCu-CCGCg -3'
miRNA:   3'- -GCUCGGGCguaUGCUAGGUGucGGUG- -5'
26320 3' -56.4 NC_005345.2 + 6108 0.69 0.417424
Target:  5'- aCGAGCCgCGCGUA-GGU--GCGGCCGCc -3'
miRNA:   3'- -GCUCGG-GCGUAUgCUAggUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 6417 0.69 0.436619
Target:  5'- gCGGGCCCGCcguCGGUCgGCgaguGGUCGCc -3'
miRNA:   3'- -GCUCGGGCGuauGCUAGgUG----UCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 6931 0.67 0.51805
Target:  5'- uCGGcGCgCGCGUACauGUCCGCGGCC-Ca -3'
miRNA:   3'- -GCU-CGgGCGUAUGc-UAGGUGUCGGuG- -5'
26320 3' -56.4 NC_005345.2 + 7711 0.69 0.446405
Target:  5'- gCGAGUgCCGCcgGUACGAgcugCCGCuGCUGCa -3'
miRNA:   3'- -GCUCG-GGCG--UAUGCUa---GGUGuCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 7979 0.71 0.306098
Target:  5'- gGAGUgCCGCAguCGAUCCgguucaaccgGCGGCCGCg -3'
miRNA:   3'- gCUCG-GGCGUauGCUAGG----------UGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 7991 0.66 0.604857
Target:  5'- --cGUCCGCGUugACGGUCUGCacaguggcgAGCCGCc -3'
miRNA:   3'- gcuCGGGCGUA--UGCUAGGUG---------UCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 8022 0.66 0.582844
Target:  5'- aCGAGCUCGaCGggcuCGAccUCgCGCAGCUGCa -3'
miRNA:   3'- -GCUCGGGC-GUau--GCU--AG-GUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 9322 0.7 0.395998
Target:  5'- cCGAGCCCGCgAUGcCGAggguggucggcaugUCCACGGUgAUc -3'
miRNA:   3'- -GCUCGGGCG-UAU-GCU--------------AGGUGUCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.