miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26320 3' -56.4 NC_005345.2 + 22022 0.81 0.075775
Target:  5'- cCGGGCCCGCcggACGGUCC-CGGCCGa -3'
miRNA:   3'- -GCUCGGGCGua-UGCUAGGuGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 10764 0.69 0.426957
Target:  5'- cCGAGCCCcuGCcgGCcGUCgagACAGCCGCg -3'
miRNA:   3'- -GCUCGGG--CGuaUGcUAGg--UGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 3454 0.69 0.436619
Target:  5'- --cGCCCGCcgggACcuGUCCACGGUCGCg -3'
miRNA:   3'- gcuCGGGCGua--UGc-UAGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 20882 0.66 0.626965
Target:  5'- gCGAGCCCGCAaaGCGcacUCACuGCCcCg -3'
miRNA:   3'- -GCUCGGGCGUa-UGCua-GGUGuCGGuG- -5'
26320 3' -56.4 NC_005345.2 + 11448 0.72 0.276748
Target:  5'- gCGAuCCCGCAggacugGCGGcCCACGGCCGa -3'
miRNA:   3'- -GCUcGGGCGUa-----UGCUaGGUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 7979 0.71 0.306098
Target:  5'- gGAGUgCCGCAguCGAUCCgguucaaccgGCGGCCGCg -3'
miRNA:   3'- gCUCG-GGCGUauGCUAGG----------UGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 39730 0.7 0.363055
Target:  5'- uGuGUCCGUcgGCGAgaccCCGCuGCCACg -3'
miRNA:   3'- gCuCGGGCGuaUGCUa---GGUGuCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 30930 0.7 0.363055
Target:  5'- cCGGcGgCCGCucACGGUgCACGGCCGCg -3'
miRNA:   3'- -GCU-CgGGCGuaUGCUAgGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 11500 0.7 0.389619
Target:  5'- -cGGCCCGCAccgACGccggaCUGCAGCCGCu -3'
miRNA:   3'- gcUCGGGCGUa--UGCua---GGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 40192 0.69 0.417424
Target:  5'- uCGAgGCCgGCGUGCaGcUCgGCAGCUACg -3'
miRNA:   3'- -GCU-CGGgCGUAUG-CuAGgUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 42944 0.69 0.417424
Target:  5'- aGAGCCuCGCGgACGggCCggGCGGCaCGCg -3'
miRNA:   3'- gCUCGG-GCGUaUGCuaGG--UGUCG-GUG- -5'
26320 3' -56.4 NC_005345.2 + 29720 0.7 0.371769
Target:  5'- cCGAGCCCG-GUGCGA-CCgacgcggcGCAGCCGa -3'
miRNA:   3'- -GCUCGGGCgUAUGCUaGG--------UGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 36775 0.78 0.116385
Target:  5'- cCGGGUCgGCGUcgGCGAUCggCACAGCCGCa -3'
miRNA:   3'- -GCUCGGgCGUA--UGCUAG--GUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 27665 0.69 0.417424
Target:  5'- aCGGGCCCGg--ACGAcaUUC-CGGCCGCg -3'
miRNA:   3'- -GCUCGGGCguaUGCU--AGGuGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 40579 0.75 0.186442
Target:  5'- uGAcGCCCGCAUggACGAUC-GCAGCCGg -3'
miRNA:   3'- gCU-CGGGCGUA--UGCUAGgUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 42747 0.7 0.371769
Target:  5'- gCGGGCCCGCGaaaGCGAUuCCGCAcaUCACa -3'
miRNA:   3'- -GCUCGGGCGUa--UGCUA-GGUGUc-GGUG- -5'
26320 3' -56.4 NC_005345.2 + 36368 0.69 0.417424
Target:  5'- --cGCCgCGUAcGCGGgcgcgcUCCGCGGCCGCg -3'
miRNA:   3'- gcuCGG-GCGUaUGCU------AGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 44234 0.69 0.436619
Target:  5'- uGGGCaaCCGCcUACGcagCCGCAGCCGu -3'
miRNA:   3'- gCUCG--GGCGuAUGCua-GGUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 45716 0.73 0.230856
Target:  5'- gGGGCCCGCAU-CGccgcCCGCcGCCGCg -3'
miRNA:   3'- gCUCGGGCGUAuGCua--GGUGuCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 16032 0.71 0.329637
Target:  5'- uGAGaCCCGCggcgaGUACGcgCUGCGGCUGCg -3'
miRNA:   3'- gCUC-GGGCG-----UAUGCuaGGUGUCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.