miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26320 3' -56.4 NC_005345.2 + 5015 1.11 0.000474
Target:  5'- aCGAGCCCGCAUACGAUCCACAGCCACg -3'
miRNA:   3'- -GCUCGGGCGUAUGCUAGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 43182 0.83 0.051446
Target:  5'- aCGAGCcacagcugccgccgCCGCAUGagccCGGUCCGCAGCCACa -3'
miRNA:   3'- -GCUCG--------------GGCGUAU----GCUAGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 22022 0.81 0.075775
Target:  5'- cCGGGCCCGCcggACGGUCC-CGGCCGa -3'
miRNA:   3'- -GCUCGGGCGua-UGCUAGGuGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 36775 0.78 0.116385
Target:  5'- cCGGGUCgGCGUcgGCGAUCggCACAGCCGCa -3'
miRNA:   3'- -GCUCGGgCGUA--UGCUAG--GUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 19276 0.77 0.12665
Target:  5'- aCGGcGgCCGCGUGCG-UCCACAGCCGg -3'
miRNA:   3'- -GCU-CgGGCGUAUGCuAGGUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 30005 0.75 0.171826
Target:  5'- gGGGUCCGgguggcgcgcCAUGCGGcCCGCAGCCACc -3'
miRNA:   3'- gCUCGGGC----------GUAUGCUaGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 17526 0.75 0.186442
Target:  5'- cCGGGCgaggaccgugUCGcCAUGCGAUCCGCgGGCCGCg -3'
miRNA:   3'- -GCUCG----------GGC-GUAUGCUAGGUG-UCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 40579 0.75 0.186442
Target:  5'- uGAcGCCCGCAUggACGAUC-GCAGCCGg -3'
miRNA:   3'- gCU-CGGGCGUA--UGCUAGgUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 36551 0.75 0.191552
Target:  5'- cCGAGCgCGUAgccgACGAU-CGCGGCCGCa -3'
miRNA:   3'- -GCUCGgGCGUa---UGCUAgGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 24384 0.74 0.202142
Target:  5'- aCGAcGCCCGCAcuuCGGgcugCgACAGCCACg -3'
miRNA:   3'- -GCU-CGGGCGUau-GCUa---GgUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 45716 0.73 0.230856
Target:  5'- gGGGCCCGCAU-CGccgcCCGCcGCCGCg -3'
miRNA:   3'- gCUCGGGCGUAuGCua--GGUGuCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 24955 0.73 0.249688
Target:  5'- uCGAGCCCGUAguCGGUCgACAGCgAa -3'
miRNA:   3'- -GCUCGGGCGUauGCUAGgUGUCGgUg -5'
26320 3' -56.4 NC_005345.2 + 11448 0.72 0.276748
Target:  5'- gCGAuCCCGCAggacugGCGGcCCACGGCCGa -3'
miRNA:   3'- -GCUcGGGCGUa-----UGCUaGGUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 1252 0.72 0.283868
Target:  5'- gCGGG-CUGCGgcACGAUCCACAGCaCGCc -3'
miRNA:   3'- -GCUCgGGCGUa-UGCUAGGUGUCG-GUG- -5'
26320 3' -56.4 NC_005345.2 + 41132 0.72 0.283868
Target:  5'- uCGAGCCCGUcgAgcuCGugaaaCCGCGGCCGCc -3'
miRNA:   3'- -GCUCGGGCGuaU---GCua---GGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 25551 0.72 0.2904
Target:  5'- --cGCCgGCGUcgcgccgaacgccGCGAcCCGCAGCCGCa -3'
miRNA:   3'- gcuCGGgCGUA-------------UGCUaGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 18891 0.72 0.298543
Target:  5'- aCGAGCCCgGCcUGC--UCgGCGGCCGCg -3'
miRNA:   3'- -GCUCGGG-CGuAUGcuAGgUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 30090 0.71 0.306098
Target:  5'- aGAcCCCGUAgGCGA-CCACGGCCAg -3'
miRNA:   3'- gCUcGGGCGUaUGCUaGGUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 7979 0.71 0.306098
Target:  5'- gGAGUgCCGCAguCGAUCCgguucaaccgGCGGCCGCg -3'
miRNA:   3'- gCUCG-GGCGUauGCUAGG----------UGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 3624 0.71 0.306098
Target:  5'- -cGGCCCGCgccgcagguGUGCcGUCCGCAGCCcgGCg -3'
miRNA:   3'- gcUCGGGCG---------UAUGcUAGGUGUCGG--UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.