miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26331 3' -64.7 NC_005345.2 + 7230 0.66 0.25622
Target:  5'- uGCGaCAGCGgguccgacCCGUCccggGCCacgUGCCCCGCc -3'
miRNA:   3'- uCGC-GUCGC--------GGCAG----CGGa--GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 18673 0.66 0.237908
Target:  5'- cGGUGaCGGCGCCGacCGCuUUCGaCCCgGCg -3'
miRNA:   3'- -UCGC-GUCGCGGCa-GCG-GAGC-GGGgUG- -5'
26331 3' -64.7 NC_005345.2 + 11909 0.66 0.232052
Target:  5'- -aCGCcGUGgCGUCGaCCUCGC-CCACg -3'
miRNA:   3'- ucGCGuCGCgGCAGC-GGAGCGgGGUG- -5'
26331 3' -64.7 NC_005345.2 + 2786 0.66 0.230895
Target:  5'- cGCGUccAGUGaucuucgaaaCCGUCGCCaggcugaucccgCGCCCCGCc -3'
miRNA:   3'- uCGCG--UCGC----------GGCAGCGGa-----------GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 37948 0.66 0.226317
Target:  5'- -cCGCcGCGaCCGUCcgggccugaGCCUCGCCggCCGCg -3'
miRNA:   3'- ucGCGuCGC-GGCAG---------CGGAGCGG--GGUG- -5'
26331 3' -64.7 NC_005345.2 + 45143 0.66 0.226317
Target:  5'- -uCGguGCGCCGa-GCCagUCGgCCCACg -3'
miRNA:   3'- ucGCguCGCGGCagCGG--AGCgGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 33233 0.66 0.225751
Target:  5'- uGCGCGGCGUCGagguucaUCGCgagcaggugCUCGgucaguCCCCACa -3'
miRNA:   3'- uCGCGUCGCGGC-------AGCG---------GAGC------GGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 22165 0.66 0.226317
Target:  5'- uGGCgaGCAGCGCCGgCGCUgggaucggguUCGUCCUcgACg -3'
miRNA:   3'- -UCG--CGUCGCGGCaGCGG----------AGCGGGG--UG- -5'
26331 3' -64.7 NC_005345.2 + 11899 0.66 0.226317
Target:  5'- cGCGaCcGcCGCCGUCGCC-CGCUaCUACg -3'
miRNA:   3'- uCGC-GuC-GCGGCAGCGGaGCGG-GGUG- -5'
26331 3' -64.7 NC_005345.2 + 30211 0.66 0.237908
Target:  5'- cGGgGCGGCGCC-UCGaCgUCGCCgCC-Cg -3'
miRNA:   3'- -UCgCGUCGCGGcAGC-GgAGCGG-GGuG- -5'
26331 3' -64.7 NC_005345.2 + 31339 0.66 0.243887
Target:  5'- cGcCGUGGCGuaGUCGCCgaucacggCGCCgCGCa -3'
miRNA:   3'- uC-GCGUCGCggCAGCGGa-------GCGGgGUG- -5'
26331 3' -64.7 NC_005345.2 + 29030 0.66 0.243887
Target:  5'- cGCGCAGCGCC-UCGCggauaagGCCCguCa -3'
miRNA:   3'- uCGCGUCGCGGcAGCGgag----CGGGguG- -5'
26331 3' -64.7 NC_005345.2 + 24149 0.66 0.25622
Target:  5'- gAGUGCcacGGCcgGCCGaUCGgCUCGCCgUACg -3'
miRNA:   3'- -UCGCG---UCG--CGGC-AGCgGAGCGGgGUG- -5'
26331 3' -64.7 NC_005345.2 + 33040 0.66 0.25622
Target:  5'- cGCGCAG-GUCGgccucgacUGCCUCGCCgUGCu -3'
miRNA:   3'- uCGCGUCgCGGCa-------GCGGAGCGGgGUG- -5'
26331 3' -64.7 NC_005345.2 + 38144 0.66 0.25622
Target:  5'- uGCGUGGCGcCCGgcggCGCaaucccCGCCaCCGCg -3'
miRNA:   3'- uCGCGUCGC-GGCa---GCGga----GCGG-GGUG- -5'
26331 3' -64.7 NC_005345.2 + 26857 0.66 0.249991
Target:  5'- cGaCGCGGCGCCGgccacgaucCGCC--GCaCCCGCg -3'
miRNA:   3'- uC-GCGUCGCGGCa--------GCGGagCG-GGGUG- -5'
26331 3' -64.7 NC_005345.2 + 2260 0.66 0.243887
Target:  5'- cGCGC-GCGCCaUCgGCgUUGCaCCCGCc -3'
miRNA:   3'- uCGCGuCGCGGcAG-CGgAGCG-GGGUG- -5'
26331 3' -64.7 NC_005345.2 + 17105 0.66 0.243887
Target:  5'- cGgGCAGCGCgGgugcgagggcgaUCGCCUCGgcggcagCCCGCu -3'
miRNA:   3'- uCgCGUCGCGgC------------AGCGGAGCg------GGGUG- -5'
26331 3' -64.7 NC_005345.2 + 21247 0.66 0.243887
Target:  5'- cGGCGguGCGCCGUCGaCgggcgggGCgUCGCg -3'
miRNA:   3'- -UCGCguCGCGGCAGCgGag-----CGgGGUG- -5'
26331 3' -64.7 NC_005345.2 + 26970 0.66 0.243887
Target:  5'- cGGCG-AGCGCCGccugcagCGCCUCa-CCCAUc -3'
miRNA:   3'- -UCGCgUCGCGGCa------GCGGAGcgGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.