miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26331 3' -64.7 NC_005345.2 + 777 1.07 0.000136
Target:  5'- cAGCGCAGCGCCGUCGCCUCGCCCCACc -3'
miRNA:   3'- -UCGCGUCGCGGCAGCGGAGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 10674 0.69 0.14602
Target:  5'- gGGCGCGGCGCgGgaagUGCCcgcgcugUGCCCgGCc -3'
miRNA:   3'- -UCGCGUCGCGgCa---GCGGa------GCGGGgUG- -5'
26331 3' -64.7 NC_005345.2 + 41824 0.69 0.15759
Target:  5'- uGCGCAcggcauugucGaCGCCGUCGCaccgcggCUCGUCCUGCg -3'
miRNA:   3'- uCGCGU----------C-GCGGCAGCG-------GAGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 7599 0.66 0.258747
Target:  5'- gAGCGC-GCGCaCGacgucgucgaccaggUCGCCgagacgcucgCGCUCCGCg -3'
miRNA:   3'- -UCGCGuCGCG-GC---------------AGCGGa---------GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 18262 0.73 0.076418
Target:  5'- cGCcgGCcGCGCCGUCGCC-CGCaCCCGg -3'
miRNA:   3'- uCG--CGuCGCGGCAGCGGaGCG-GGGUg -5'
26331 3' -64.7 NC_005345.2 + 30187 0.73 0.078544
Target:  5'- cGCGUGGCGCuCGUU-CCUCGCCgaCCACg -3'
miRNA:   3'- uCGCGUCGCG-GCAGcGGAGCGG--GGUG- -5'
26331 3' -64.7 NC_005345.2 + 11427 0.72 0.092537
Target:  5'- cAGC-CGGCGCCG-CGCCgcagCGCgauCCCGCa -3'
miRNA:   3'- -UCGcGUCGCGGCaGCGGa---GCG---GGGUG- -5'
26331 3' -64.7 NC_005345.2 + 43970 0.72 0.095088
Target:  5'- cGUGCAGC-CCGgCGgCUCGCCCgACu -3'
miRNA:   3'- uCGCGUCGcGGCaGCgGAGCGGGgUG- -5'
26331 3' -64.7 NC_005345.2 + 5686 0.71 0.108872
Target:  5'- cGCGCuGCGCCGcgaacUCGCCgcCGUCCCuCg -3'
miRNA:   3'- uCGCGuCGCGGC-----AGCGGa-GCGGGGuG- -5'
26331 3' -64.7 NC_005345.2 + 21943 0.7 0.134872
Target:  5'- gAGCGCuGCGCCGaccgcUGCCgaucaCGgCCCGCg -3'
miRNA:   3'- -UCGCGuCGCGGCa----GCGGa----GCgGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 34310 0.7 0.131333
Target:  5'- cAGuCGCAGCucGCCGUCGCCcUGUUCgGCa -3'
miRNA:   3'- -UC-GCGUCG--CGGCAGCGGaGCGGGgUG- -5'
26331 3' -64.7 NC_005345.2 + 41306 0.71 0.103146
Target:  5'- cGGUGcCGGCGCCGgcgGCUggaCGCCCUACa -3'
miRNA:   3'- -UCGC-GUCGCGGCag-CGGa--GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 11640 0.73 0.068453
Target:  5'- gAGCGCAccGCGCCG-CaGCCcgCGCCCgGCg -3'
miRNA:   3'- -UCGCGU--CGCGGCaG-CGGa-GCGGGgUG- -5'
26331 3' -64.7 NC_005345.2 + 18130 0.7 0.134872
Target:  5'- cGC-CGGCGCCGUCGUCcCGauCCCCGg -3'
miRNA:   3'- uCGcGUCGCGGCAGCGGaGC--GGGGUg -5'
26331 3' -64.7 NC_005345.2 + 40393 0.73 0.069212
Target:  5'- uGCGCAGCcuccccgaugcugcaGUCGUCGCgCUCGCCaCCGa -3'
miRNA:   3'- uCGCGUCG---------------CGGCAGCG-GAGCGG-GGUg -5'
26331 3' -64.7 NC_005345.2 + 46554 0.71 0.097177
Target:  5'- cGCGCAugagguaucccuCGCCGUCaGCCUCGgCCCCGa -3'
miRNA:   3'- uCGCGUc-----------GCGGCAG-CGGAGC-GGGGUg -5'
26331 3' -64.7 NC_005345.2 + 31257 0.7 0.134872
Target:  5'- uGCGCGGCGCCGUgaucggcgacuaCGCCacggCGgaCCCCGa -3'
miRNA:   3'- uCGCGUCGCGGCA------------GCGGa---GC--GGGGUg -5'
26331 3' -64.7 NC_005345.2 + 36176 0.69 0.14602
Target:  5'- cGUGCAGCGuuGgUCGCCggugGUCCUGCa -3'
miRNA:   3'- uCGCGUCGCggC-AGCGGag--CGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 17666 0.73 0.074347
Target:  5'- cGGCGCcuaCGCCGcgcUCGCC-CGCCUCACa -3'
miRNA:   3'- -UCGCGuc-GCGGC---AGCGGaGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 12319 0.72 0.085268
Target:  5'- uGCGCGGCGCCGaucggUCGUCccugcaagaCGCUCCGCa -3'
miRNA:   3'- uCGCGUCGCGGC-----AGCGGa--------GCGGGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.