miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26331 3' -64.7 NC_005345.2 + 777 1.07 0.000136
Target:  5'- cAGCGCAGCGCCGUCGCCUCGCCCCACc -3'
miRNA:   3'- -UCGCGUCGCGGCAGCGGAGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 22003 0.78 0.031351
Target:  5'- cGGCGCAGCGCUcgcagguggguGUCGCCaUGCCCC-Ca -3'
miRNA:   3'- -UCGCGUCGCGG-----------CAGCGGaGCGGGGuG- -5'
26331 3' -64.7 NC_005345.2 + 5745 0.78 0.032245
Target:  5'- cGGCGCAGCGCgGUCGgCUCGgUCCGg -3'
miRNA:   3'- -UCGCGUCGCGgCAGCgGAGCgGGGUg -5'
26331 3' -64.7 NC_005345.2 + 4331 0.77 0.035081
Target:  5'- aGGCGCAGCaaCGUgGCCUCGCCcgcuCCGCa -3'
miRNA:   3'- -UCGCGUCGcgGCAgCGGAGCGG----GGUG- -5'
26331 3' -64.7 NC_005345.2 + 9735 0.74 0.061289
Target:  5'- cGGCGCucGCGguaCGUCaGCC-CGCCCCACa -3'
miRNA:   3'- -UCGCGu-CGCg--GCAG-CGGaGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 11640 0.73 0.068453
Target:  5'- gAGCGCAccGCGCCG-CaGCCcgCGCCCgGCg -3'
miRNA:   3'- -UCGCGU--CGCGGCaG-CGGa-GCGGGgUG- -5'
26331 3' -64.7 NC_005345.2 + 40393 0.73 0.069212
Target:  5'- uGCGCAGCcuccccgaugcugcaGUCGUCGCgCUCGCCaCCGa -3'
miRNA:   3'- uCGCGUCG---------------CGGCAGCG-GAGCGG-GGUg -5'
26331 3' -64.7 NC_005345.2 + 14408 0.73 0.07233
Target:  5'- cGCGCA-CGCCGUgCGCCU-GCCCCuCg -3'
miRNA:   3'- uCGCGUcGCGGCA-GCGGAgCGGGGuG- -5'
26331 3' -64.7 NC_005345.2 + 12611 0.73 0.074347
Target:  5'- uGC-CAGCGCUG-CGCC-CGCUCCGCg -3'
miRNA:   3'- uCGcGUCGCGGCaGCGGaGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 17666 0.73 0.074347
Target:  5'- cGGCGCcuaCGCCGcgcUCGCC-CGCCUCACa -3'
miRNA:   3'- -UCGCGuc-GCGGC---AGCGGaGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 34417 0.73 0.074347
Target:  5'- cAGUGCGGCGCCGagGuCUUCGgCCUGCg -3'
miRNA:   3'- -UCGCGUCGCGGCagC-GGAGCgGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 18262 0.73 0.076418
Target:  5'- cGCcgGCcGCGCCGUCGCC-CGCaCCCGg -3'
miRNA:   3'- uCG--CGuCGCGGCAGCGGaGCG-GGGUg -5'
26331 3' -64.7 NC_005345.2 + 30187 0.73 0.078544
Target:  5'- cGCGUGGCGCuCGUU-CCUCGCCgaCCACg -3'
miRNA:   3'- uCGCGUCGCG-GCAGcGGAGCGG--GGUG- -5'
26331 3' -64.7 NC_005345.2 + 7973 0.72 0.080727
Target:  5'- gAGCGCgucauacgAGCaGCCGUgCGCCgccucggCGUCCCACg -3'
miRNA:   3'- -UCGCG--------UCG-CGGCA-GCGGa------GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 25925 0.72 0.082968
Target:  5'- cGGCGaCGGCcgGCCGUUGuCCUCGgUCCGCg -3'
miRNA:   3'- -UCGC-GUCG--CGGCAGC-GGAGCgGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 12319 0.72 0.085268
Target:  5'- uGCGCGGCGCCGaucggUCGUCccugcaagaCGCUCCGCa -3'
miRNA:   3'- uCGCGUCGCGGC-----AGCGGa--------GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 10754 0.72 0.085268
Target:  5'- gGGCaCAGCGCgGgcacuucccgCGCCgCGCCCCACc -3'
miRNA:   3'- -UCGcGUCGCGgCa---------GCGGaGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 22671 0.72 0.090051
Target:  5'- aGGCGCAGCGCaugcaaCGCCcggggcUCGCCCCu- -3'
miRNA:   3'- -UCGCGUCGCGgca---GCGG------AGCGGGGug -5'
26331 3' -64.7 NC_005345.2 + 11427 0.72 0.092537
Target:  5'- cAGC-CGGCGCCG-CGCCgcagCGCgauCCCGCa -3'
miRNA:   3'- -UCGcGUCGCGGCaGCGGa---GCG---GGGUG- -5'
26331 3' -64.7 NC_005345.2 + 11491 0.72 0.09483
Target:  5'- cGGCGCGGCGCCGgcuggucggcgUCGUcgaggucgagcugCUCGCCCgCAg -3'
miRNA:   3'- -UCGCGUCGCGGC-----------AGCG-------------GAGCGGG-GUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.